Job Description P64572 Confidence 99.93% Date Thu Jan 5 12:09:33 GMT 2012 Rank 5 Aligned Residues 184 % Identity 18% Template c2w0sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate Resolution 2.92 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	I	A	V	V	G	C	D	G	T	G	K	S	T	L	T	T	D	L	V	K	S	L	Q	Q	H	W	Q	T	E	R	R	Y	L	G	L	L	S	G	E	D	G	D	K	I	K	R	L	P	L	V	G	V	W	L	E	R	R	L	A	A	K	S	S	K	T	Q	S	M	K	T	K	S	P	A	L	W	A
Query Conservation
Alig confidence																																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	I	V	F	E	G	L	D	K	S	G	K	T	T	Q	C	M	N	I	M	E	S	I	P	A	N	T	I	K	Y	.	L	N	F	P	Q	R	S	T	V	T	G	K	M	I	D	D	Y	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	K	T	Y	N	D
Template Known Secondary structure										S	T	T	S													S		T	T	S				.			S	S		T	T	S											T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																						.	.	.	.	.	60	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	M	Y	C	F	S	L	R	R	M	A	N	L	R	K	V	Q	R	L	A	Q	S	G	V	L	V	V	S	D	R	F	P	Q	A	E	I	S	G	F	Y	Y	D	G	P	G	I	G	V	E	R	A	T	G	K	I	S	M	F	L	A	Q	R	E	R	R	L	Y	Q	Q	M	A	Q	Y	R	P	E	L	I
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		H	I	V	N	L	L	F	C	A	N	R	W	E	F	A	S	F	I	Q	E	Q	L	E	Q	G	I	T	L	I	V	D	R	Y	A	F	S	G	V	A	Y	A	A	A	.	.	.	.	.	.	.	.	.	.	K	G	A	S	M	T	L	S	K	S	Y	E	S	G	L	.	.	.	.	.	.	P	K	P	D	L	V
Template Known Secondary structure														T	T										T	T							S												.	.	.	.	.	.	.	.	.	.	T	T											T	T	S	.	.	.	.	.	.				S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.											.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure															.	.	.																							.
Query SS confidence															.	.	.																							.
Query Sequence		I	R	L	G	I	D	I	E	T	A	I	S	R	.	.	.	K	P	D	H	D	Y	A	E	L	Q	D	K	I	G	V	M	S	K	I	G	Y	N	.	G	T	K	I	L	E	I	D	S	R	A	P	Y	S	E	V	L	E	Q	A	Q	K	A	V	S	L	V
Query Conservation															.	.	.																							.
Alig confidence															.	.	.																							.
Template Conservation
Template Sequence		I	F	L	E	S	G	S	K	E	I	N	R	N	V	G	E	E	I	Y	E	D	V	T	F	Q	Q	K	V	L	Q	E	Y	K	K	M	I	E	E	G	D	I	H	W	Q	I	I	S	S	E	F	E	E	D	V	K	K	E	L	I	K	N	I	V	I	E	A
Template Known Secondary structure												T	T		B		S	S	T	T		B																	T		S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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