Job Description P64572 Confidence 98.64% Date Thu Jan 5 12:09:33 GMT 2012 Rank 108 Aligned Residues 144 % Identity 12% Template c1ly1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase Resolution 2.00 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	I	A	V	V	G	C	D	G	T	G	K	S	T	L	T	T	D	L	V	K	S	L	Q	Q	H	W	Q	T	E	R	R	Y	L	G	L	L	S	G	E	D	G	D	K	I	K	R	L	P	L	V	G	V	W	L	E	R	R	L	A	A	K	S	S	K	T	Q	S	M	K	T	K	S	P	A	L	W	A
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	I	L	T	I	G	C	P	G	S	G	K	S	T	W	A	R	E	F	I	A	K	N	P	G	F	Y	N	.	.	.	.	.	.	.	.	.	.	.	I	N	R	D	D	Y	R	Q	S	I	M	A	H	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	E	Y	K	Y	T
Template Known Secondary structure											T	T	S	S												S	T	T				.	.	.	.	.	.	.	.	.	.	.											T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.												.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																		.	.	.	50	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	M	Y	C	F	S	L	R	R	M	A	N	L	R	K	V	Q	R	L	A	Q	S	G	V	L	V	V	S	D	R	F	P	Q	A	E	I	S	G	F	Y	Y	D	G	P	G	I	G	V	E	R	A	T	G	K	I	S	M	F	L	A	Q	R	E	R	R	L	Y	Q	Q	M	A	Q	Y	R	P	E	L	I
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template Sequence		K	K	K	E	G	I	V	T	G	M	Q	F	D	T	A	K	S	I	L	Y	G	G	D	S	V	K	G	V	I	I	S	D	T	N	L	N	P	E	R	R	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	E	T	F	A	K	E	Y	.	.	.	.	.	.	G	W	K	V	E	H
Template Known Secondary structure																					T	S		S	S								S				S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.																			.	.	.	.	100	.	.	.							.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		I	R	L	G	I	D	I	E	T	A	I	S	R	K	P	D	H	D	Y	.	.	.	.	.	A	E	L	Q	D	K	I	G	V	M	S	K	I	G	Y	N	G
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.
Template Conservation
Template Sequence		K	V	F	D	V	P	W	T	E	L	V	K	R	N	S	K	R	G	T	K	A	V	P	I	D	V	L	R	S	M	Y	K	S	M	R	E	Y	L	G	L	P
Template Known Secondary structure																T	T		G	G	G																			T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions