Return to main results Retrieve Phyre Job Id

Job DescriptionA5PFJ8
Confidence99.78%DateThu Jan 5 10:55:34 GMT 2012
Rank2Aligned Residues67
% Identity31%Templatec2hwvA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60........
Predicted Secondary structure 






























Query SS confidence 


































































Query Sequence  MLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD
Query Conservation 
  
    
 




 
   

          
   
  




         
 

 
 

 
   
Alig confidence 


































































Template Conservation 
  
       

   
   

          
   
 





         
 

 
 

 
  
Template Sequence  LYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNP
Template Known Secondary structure  TTT

B
T
GGGTT

SSTTS
SSTTT


Template Predicted Secondary structure 
























Template SS confidence 


































































   165....170.........180.........190.........200.........210.........220.........230.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions