Return to main results Retrieve Phyre Job Id

Job DescriptionP76407
Confidence38.56%DateThu Jan 5 12:22:50 GMT 2012
Rank246Aligned Residues100
% Identity9%Templated1usga_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.53

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40...... ...50.........60.........70.........80
Predicted Secondary structure 


















..









Query SS confidence 











































. .

































Query Sequence  EFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDA. . ARYVEEARKFGVATVIAGGGDGTINEVSTALIQC
Query Conservation     
  

 

 

           
   
    
  
     
..            
 


 





  
   
   
Alig confidence 











































..

































Template Conservation      
 
                      
  
                   
       
            
      
Template Sequence  KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSV
Template Known Secondary structure 

SS
SSTT



TT



TT

S
T
Template Predicted Secondary structure 
























Template SS confidence 















































































   137..140.........150.........160.........170.........180.........190.........200.........210......
 
   81........90.........100....
Predicted Secondary structure 










Query SS confidence 























Query Sequence  EGDDIPALGILPLGTANDFATSVG
Query Conservation       
 




 

 
  
  

Alig confidence 


..


















Template Conservation 
  ..                   
Template Sequence  GLK. . TQFMGPEGVGNASLSNIAG
Template Known Secondary structure  T

..

GGG

TTG
Template Predicted Secondary structure 


..





Template SS confidence 























   217.. 220.........230........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions