Job Description P76407 Confidence 98.49% Date Thu Jan 5 12:22:50 GMT 2012 Rank 15 Aligned Residues 258 % Identity 14% Template c3afoB_ PDB info PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																				50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																					.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	F	P	A	S	L	L	I	L	N	G	K	S	T	D	N	L	P	.	L	R	E	A	I	M	L	L	R	E	E	G	M	T	I	H	V	R	V	T	W	E	K	G	D	A	A	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	E	A	R	K	F	G	V	A	T	V
Query Conservation																					.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	L	Q	N	V	Y	I	T	K	K	P	W	T	P	S	T	R	E	A	M	V	E	F	I	T	H	L	H	E	S	Y	P	E	V	N	V	I	V	Q	P	D	V	A	E	E	I	S	Q	D	F	K	S	P	L	E	N	D	P	N	R	P	H	I	L	Y	T	G	P	E	Q	D	I	V	N	R	T	D	L	L
Template Known Secondary structure		S											T	T																				T	T														G	G	G			S		G	G	G		T	T	S																	S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	G	G	D	G	T	I	N	E	V	S	T	A	L	I	Q	C	E	G	D	D	I	P	A	L	G	I	L	P	L	G	T	A	N	D	F	A	T	S	V	G	I	P	E	A	L	D	K	A	L	K	L	A	I	A	G	D	A	I	A	I	D	M	A	Q	V	N	K	Q	T	C	F	I	N	M	A	T	G
Query Conservation
Alig confidence																							.	.	.																			.	.																												.
Template Conservation																							.	.	.																			.	.																												.
Template Sequence		V	T	L	G	G	D	G	T	I	L	H	G	V	S	M	F	G	N	T	Q	V	.	.	.	P	P	V	L	A	F	A	L	G	T	L	G	F	L	S	P	F	D	.	.	F	K	E	H	K	K	V	F	Q	E	V	I	S	S	R	A	K	C	L	H	R	T	R	L	E	C	H	.	L	K	K	K	D	S	N	S
Template Known Secondary structure						S											T	T	T	S			.	.	.									S	S			S	S					.	.	G	G	G										T	T														.				S	S	S	S	S
Template Predicted Secondary structure																							.	.	.																			.	.																												.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	G	T	R	I	T	T	E	T	P	E	K	L	K	A	A	L	G	S	V	S	Y	I	I	H	G	L	M	R	M	D	T	L	Q	P	D	R	C	E	I	R	G	E	N	F	H	W	Q	G	D	A	L	V	I	G	I	G	N	G	R	Q	A	G	G	G	Q	Q	L	C	P	N	A	L	I	N	D	G	L	L
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	V	T	H	A	M	N	D	I	F	L	H	R	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	H	L	T	N	L	D	I	F	I	D	G	E	F	L	T	R	T	T	A	D	G	V	A	L	A	T	P	T	G	S	T	A	Y	S	L	S	A	G	G	S	I	V	S	P	L	V
Template Known Secondary structure								S	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S									T	T																T	G	G	G	G	T					T	T						T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.																	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																								.												.	.	.	.
Query SS confidence																																								.												.	.	.	.
Query Sequence		Q	L	R	I	F	T	G	D	E	I	L	P	A	L	V	S	T	L	K	S	D	E	D	N	P	N	I	I	E	G	A	S	S	W	F	D	I	Q	.	A	P	H	D	I	T	F	N	L	D	G	.	.	.	.	E	P	L	S	G	Q	N	F	H	I	E	I	L	P	A	A	L	R	C	R
Query Conservation																																								.												.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																				.												.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.
Template Sequence		P	A	I	L	M	T	P	I	C	P	.	.	.	.	.	.	.	.	.	R	S	L	S	F	R	P	L	I	L	P	H	S	S	H	I	R	I	K	I	G	S	S	V	V	K	L	S	V	D	G	I	P	Q	Q	D	L	D	V	G	D	E	I	Y	V	I	N	E	V	K	R	S	G	I	Y
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	S		S									T	T																	T	T								T	T													S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.										.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions