Job Description P76407 Confidence 98.59% Date Thu Jan 5 12:22:50 GMT 2012 Rank 14 Aligned Residues 235 % Identity 15% Template c2i2aA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	L	I	L	N	G	K	S	T	D	N	L	P	L	R	E	A	I	M	L	L	R	E	E	G	M	T	I	H	V	R	V	T	W	E	K	G	D	A	A	R	Y	V	E	E	A	R	K	F	G	V	A	T	V	I	A	G	G	G	D	G	T	I	N	E	V	S	T	A	L	I	Q	C	E	G	D	D	I
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Sequence		K	Y	M	I	T	S	K	G	D	E	K	S	D	L	L	R	L	N	M	I	A	G	F	G	E	Y	D	M	E	Y	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	P	E	I	V	I	S	I	G	G	D	G	T	F	L	S	A	F	H	Q	Y	E	E	R	L	D	E	.	.
Template Known Secondary structure										S															T	T	S	S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S							S											T	T	T	S	G	G	G	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.												.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	L	G	I	L	P	L	G	T	A	N	D	F	A	T	S	V	G	I	P	E	A	L	D	K	A	L	K	L	A	I	A	G	D	A	I	A	I	D	M	A	Q	V	N	K	Q	.	.	.	.	.	.	.	.	.	.	.	T	C	F	I	N	M	A	T	G	G	F	G	T	R	I	T	T	E	T	P	E	K
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																														.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																																																						.	.	.	.	.	.	.	.	.
Template Sequence		I	A	F	I	G	I	H	T	G	H	L	G	F	Y	A	D	.	.	W	R	P	A	E	A	D	K	L	V	K	L	L	A	K	G	E	Y	Q	K	V	S	Y	P	L	L	K	T	T	V	K	Y	G	I	G	K	K	E	A	T	Y	L	A	L	N	E	S	T	V	K	S	S	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	S	S			S	S			.	.			G	G	G											T																	S	S	S									S	S							S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	A	A	L	G	S	V	S	Y	I	I	H	G	L	M	R	M	D	T	L	Q	P	D	R	C	E	I	R	G	E	N	F	H	W	Q	G	D	A	L	V	I	G	I	G	N	G	R	Q	A	G	G	G	Q	Q	L	C	P	N	A	L	I	N	D	G	L	L	Q	L	R	I	F	T	G	D	E	I	L	P	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	F	V	V	D	V	V	I	N	D	I	H	F	E	R	F	R	G	D	G	L	C	M	S	T	P	S	G	T	T	A	Y	N	K	S	L	G	G	A	L	M	H	P	S	I	E	A	M	Q	L	T	E	M	A	S	I	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									T	T									S							T	G	G	G	G	T					T	T						T	T	S									S			.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Template SS confidence
																							131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																												.	.														.	.	.
Query SS confidence																												.	.														.	.	.
Query Sequence		L	V	S	T	L	K	S	D	E	D	N	P	N	I	I	E	G	A	S	S	W	F	D	I	Q	A	.	.	P	H	D	I	T	F	N	L	D	G	E	P	L	.	.	.	S	G	Q	N	F	H	I	E	I	L	P	A	A	L	R	C	R	L	P	P	D	C	P
Query Conservation																												.	.														.	.	.
Alig confidence		.	.																									.	.														.	.	.
Template Conservation		.	.
Template Sequence		.	.	N	N	R	V	Y	R	T	I	G	S	P	L	V	F	P	K	H	H	V	V	S	L	Q	P	V	N	D	K	D	F	Q	I	S	V	D	H	L	S	I	L	H	R	D	V	Q	E	I	R	Y	E	V	S	A	K	K	I	H	F	A	R	F	R	S	F	P
Template Known Secondary structure		.	.		S	S	S	S					S						T	T								S	S									T	T							S																			S
Template Predicted Secondary structure		.	.
Template SS confidence
				188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions