Job Description P76407 Confidence 54.12% Date Thu Jan 5 12:22:50 GMT 2012 Rank 194 Aligned Residues 89 % Identity 18% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60																	.	.	.
Predicted Secondary structure																																									.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	F	P	A	S	L	L	I	L	N	G	K	S	T	D	N	L	P	L	R	E	A	I	M	L	L	R	E	E	G	M	T	I	H	V	R	V	T	.	.	W	E	K	G	D	A	A	R	Y	V	E	E	A	R	K	F	G	V	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A
Query Conservation																																									.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																			.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		K	S	P	P	T	V	L	V	I	C	G	P	G	N	N	G	G	D	G	L	.	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y	Y	P	K	R	P	N	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E	L	V	V
Template Known Secondary structure		S	S	S									S	S								.									T	T								S	S				S													T	T			B		S	S			S	S									S
Template Predicted Secondary structure																						.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		64	.			.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.
Predicted Secondary structure				.	.		.	.	.	.	.	.	.																									.
Query SS confidence				.	.		.	.	.	.	.	.	.																									.
Query Sequence		G	G	.	.	G	.	.	.	.	.	.	.	D	G	T	I	N	E	V	S	T	A	L	I	Q	C	E	G	D	D	I	P	A	L	G	I	.	L	P	L	G
Query Conservation				.	.		.	.	.	.	.	.	.																									.
Alig confidence				.	.		.	.	.	.	.	.	.																	.	.	.						.
Template Conservation																														.	.	.
Template Sequence		D	A	I	F	G	F	S	F	K	G	D	V	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	.	.	.	P	I	A	S	I	D	I	P	S	G
Template Known Secondary structure				S			T	T							T	T									T	T		S	S	.	.	.							.		T	T
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions