 |
Job Description | Q9JMS1 | Confidence | 3.47% | Date | Thu Jan 5 12:37:56 GMT 2012 |
Rank | 43 | Aligned Residues | 30 |
% Identity | 27% | Template | d1fsha_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| DEP domain
|
Resolution | UNK |
|
  |   |
107 | . | . | 110 | . | . | . | . | . | . | . | |
|
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|  |  | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | E | A | Q | W | I | C | N | H | S | E | . |
. |
Q | V | R | P | E | A | F | I | I | G | S | V | C | C | F | S | G | M | I |
Query Conservation |   |
|
|
|
|   |
|
|   |   |   |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|
|
|   |
|
|   |   |
|   |
|
Template Sequence |   |
D | V | V | D | W | L | Y | T | H | V | E | G | F | K | E | R | R | E | A | R | K | Y | A | S | S | M | L | K | H | G | F | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|