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Job DescriptionP39344
Confidence0.63%DateThu Jan 5 11:59:34 GMT 2012
Rank85Aligned Residues127
% Identity7%Templatec3aymB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:rhodopsin; PDBTitle: crystal structure of the batho intermediate of squid rhodopsin
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  LGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTN
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Template Sequence  LCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVA
Template Known Secondary structure  TTTSSS
SS
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   202.......210.........220.........230.........240.........250.........260.........270.........280.
 
   251........260.........270..... ....280.........290.......
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Query Sequence  TVRLFFEFVGNPAVALFIAIVIAIF. . . TLGRRNGRTIEQIMDIIGDSIG
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Template Sequence  LLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP
Template Known Secondary structure  S
TTT

GGGTT
TT
G
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   282.......290.........300.........310.........320.........330.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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