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Job Description | P39344 | Confidence | 0.63% | Date | Thu Jan 5 11:59:34 GMT 2012 |
Rank | 85 | Aligned Residues | 127 |
% Identity | 7% | Template | c3aymB_ |
PDB info |
PDB header:signaling protein | Chain: B: PDB Molecule:rhodopsin; |
PDBTitle: crystal structure of the batho intermediate of squid rhodopsin
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Resolution | 2.80 Å |
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171 | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
L | G | T | T | L | L | Y | G | F | I | I | T | I | P | T | V | I | V | A | G | P | L | F | S | K | L | L | T | R | F | E | K | A | P | P | E | G | L | F | N | P | H | L | F | S | E | E | E | M | P | S | F | W | N | S | I | F | A | A | V | I | P | V | I | L | M | A | I | A | A | V | C | E | I | T | L | P | K | T | N |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | C | M | F | I | L | G | F | F | G | P | I | L | I | I | F | F | C | Y | F | N | I | V | M | S | V | S | N | H | E | K | E | M | A | A | M | A | K | R | L | N | A | K | E | L | R | K | A | Q | A | G | A | N | A | E | M | R | L | A | K | I | S | I | V | I | V | S | Q | F | L | L | S | W | S | P | Y | A | V | V | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . |
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251 | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | |
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. | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
T | V | R | L | F | F | E | F | V | G | N | P | A | V | A | L | F | I | A | I | V | I | A | I | F | . |
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T | L | G | R | R | N | G | R | T | I | E | Q | I | M | D | I | I | G | D | S | I | G |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | L | A | Q | F | G | P | L | E | W | V | T | P | Y | A | A | Q | L | P | V | M | F | A | K | A | S | A | I | H | N | P | M | I | Y | S | V | S | H | P | K | F | R | E | A | I | S | Q | T | F | P |
Template Known Secondary structure |   |
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| G |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
282 | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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