Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | P | L | I | I | I | A | A | G | V | A | L | L | L | I | L | M | I | G | F | K | V | N | G | F | I | A | L | V | L | V | A | A | V | V | G | F | A | E | G | M | D | A | Q | A | V | L | H | S | I | Q | N | G | I | G | S | T | L | G | G |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
L | A | M | I | L | G | F | G | A | M | L | G | K | L | I | S | D | T | G | A | A | Q | R | I | A | T | T | L | I | A | T | F | G | K | K | R | V | Q | W | A | L | V | I | T | G | L | V | V | G | L | A | M | F | F | E | V | G | F | V | L |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
L | L | P | L | V | F | T | I | V | A | S | S | G | L | P | L | L | Y | V | G | V | P | M | V | A | A | L | S | V | T | H | C | F | L | P | P | H | P | G | P | T | A | I | A | T | I | F | E | A | N | L | G | T | T | L | L | Y | G | F | I |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Sequence |   |
I | T | I | P | T | V | I | V | A | G | P | L | F | S | K | L | L | T | R | F | E | K | A | P | P | E | G | L | F | N | P | H | L | F | S | E | E | E | M | P | S | F | W | N | S | I | F | A | A | V | I | P | V | I | L | M | A | I | A | A |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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| ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Sequence |   |
V | C | E | I | T | L | P | K | T | N | T | V | R | L | F | F | E | F | V | G | N | P | A | V | A | L | F | I | A | I | V | I | A | I | F | T | L | G | R | R | N | G | R | T | I | E | Q | I | M | D | I | I | G | D | S | I | G | A | I | A |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
Sequence |   |
M | I | V | F | I | I | A | G | G | G | A | F | K | Q | V | L | V | D | S | G | V | G | H | Y | I | S | H | L | M | T | G | T | T | L | S | P | L | L | M | C | W | T | V | A | A | L | L | R | I | A | L | G | S | A | T | V | A | A | I | T |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 |
Sequence |   |
T | A | G | V | V | L | P | I | I | N | V | T | H | A | D | P | A | L | M | V | L | A | T | G | A | G | S | V | I | A | S | H | V | N | D | P | G | F | W | L | F | K | G | Y | F | N | L | T | V | G | E | T | L | R | T | W | T | V | M | E |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . |
Sequence |   |
T | L | I | S | I | M | G | L | L | G | V | L | A | I | N | A | V | L | H |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |
Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 2a65 chain A domain 1
Region: 75 - 287 Aligned: 199 Modelled: 213 Confidence: 20.0% Identity: 9% Fold: SNF-like Superfamily: SNF-like Family: SNF-like
Phyre2
2 |
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PDB 1fft chain B domain 2
Region: 171 - 239 Aligned: 69 Modelled: 69 Confidence: 18.7% Identity: 10% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region
Phyre2
3 |
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PDB 2b2h chain A
Region: 78 - 225 Aligned: 148 Modelled: 148 Confidence: 10.0% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
Phyre2
4 |
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PDB 2bbj chain B
Region: 159 - 201 Aligned: 40 Modelled: 43 Confidence: 6.3% Identity: 18% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
Phyre2
5 |
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PDB 2jln chain A
Region: 177 - 217 Aligned: 41 Modelled: 41 Confidence: 5.2% Identity: 5% PDB header:membrane protein Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
Phyre2
|
Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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