Job Description P39344 Confidence 0.73% Date Thu Jan 5 11:59:34 GMT 2012 Rank 66 Aligned Residues 127 % Identity 8% Template c2ziyA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rhodopsin; PDBTitle: crystal structure of squid rhodopsin Resolution 3.70 Å

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		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	T	T	L	L	Y	G	F	I	I	T	I	P	T	V	I	V	A	G	P	L	F	S	K	L	L	T	R	F	E	K	A	P	P	E	G	L	F	N	P	H	L	F	S	E	E	E	M	P	S	F	W	N	S	I	F	A	A	V	I	P	V	I	L	M	A	I	A	A	V	C	E	I	T	L	P	K	T	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	C	M	F	I	L	G	F	F	G	P	I	L	I	I	F	F	C	Y	F	N	I	V	M	S	V	S	N	H	E	K	E	M	A	A	M	A	K	R	L	N	A	K	E	L	R	K	A	Q	A	G	A	N	A	E	M	R	L	A	K	I	S	I	V	I	V	S	Q	F	L	L	S	W	S	P	Y	A	V	V	A
Template Known Secondary structure								T	T																				T								T	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		T	V	R	L	F	F	E	F	V	G	N	P	A	V	A	L	F	I	A	I	V	I	A	.	.	.	I	F	T	L	G	R	R	N	G	R	T	I	E	Q	I	M	D	I	I	G	D	S	I	G
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		L	L	A	Q	F	G	P	L	E	W	V	T	P	Y	A	A	Q	L	P	V	M	F	A	K	A	S	A	I	H	N	P	M	I	Y	S	V	S	H	P	K	F	R	E	A	I	S	Q	T	F	P
Template Known Secondary structure							S		T	T	T																G	G	G							T	T	T													G
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions