Job Description P39344 Confidence 1.17% Date Thu Jan 5 11:59:34 GMT 2012 Rank 36 Aligned Residues 325 % Identity 12% Template c2xq2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Resolution 2.73 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		P	L	I	I	I	A	A	G	V	A	L	L	L	I	L	M	I	G	F	K	V	N	G	F	I	A	L	V	L	V	A	A	V	V	G	F	A	E	G	M	D	A	Q	A	V	L	H	S	I	Q	N	G	I	G	S	T	.	.	.	L	G	G	L	A	M	I	L	G	F	G	A	M	L	G	K	L	I	S	D	T
Query Conservation																																																										.	.	.
Alig confidence																											.																															.	.	.
Template Conservation																											.
Template Sequence		D	I	M	V	F	A	I	Y	V	A	I	I	I	G	V	G	L	W	V	S	L	P	W	W	A	.	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	E	K
Template Known Secondary structure																			T								.							G	G	G	S	S														T		G	G	G	G																T								T
Template Predicted Secondary structure																											.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	Q	R	I	A	T	T	L	I	A	T	F	G	K	K	R	V	Q	W	A	L	V	I	T	G	L	V	V	G	L	A	M	F	F	E	V	G	F	V	L	L	L	P	L	V	F	T	I	V	A	S	S	G	L	P	L	L	Y	V	G	V	P	M	V	A	A	L	S	V	T	H	C	F	L	P	P	H	P
Query Conservation
Alig confidence					.													.																																			.	.	.	.	.																								.
Template Conservation					.													.																																			.	.	.	.	.																								.
Template Sequence		G	I	Y	.	T	I	P	E	F	V	E	K	R	F	N	K	.	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	.	.	.	.	.	G	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	Y	G	G	.
Template Known Secondary structure		T			.	S									T			.																	T																		.	.	.	.	.																					T	T		.
Template Predicted Secondary structure					.													.																																			.	.	.	.	.																								.
Template SS confidence
		110	.	.		.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	T	A	I	A	T	I	F	E	A	N	L	G	T	T	L	L	Y	G	F	I	I	T	I	P	T	V	I	V	A	G	P	L	F	S	K	L	L	T	R	F	E	K	A	P	P	E	G	L	F	N	P	H	L	F	S	E	E	E	M	P	S	F	W	N	S	I	F	A	A	V	I	P	V	I	L	M	A	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	V	V	W	T	D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W
Template Known Secondary structure		.	.	.	.	.	.	.																													G	G	G														G	G	G	S		S	S			S	S	S	G	G	G	G	T	S		T	T					S	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	A	V	C	E	I	T	L	P	K	T	N	T	V	R	L	F	F	E	F	V	G	N	P	A	V	A	L	F	I	A	I	V	I	A	I	F	T	L	G	R	R	N	G	R	T	I	E	Q	I	M	D	I	I	G	D	S	I	G	A	I	A	M	I	V	F	I	I	A	G	G	G	A	F	K	Q	V	L	V	.
Query Conservation																																																																																	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	A	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S
Template Known Secondary structure									T	T	T		S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																T	T	T						T											T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																									.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
													318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	D	S	G	V	G	H	Y	I	S	H	L	M	T	G	T	T	L	S	P	L	L	M	C	W	T	V	A	A	L	L	R	I	A	L	G	S	A	T	V	A	A	I	T	T	A	G	V	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	Q	L	M	A	S	L	G	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T
Template Known Secondary structure															S	T	B	G	G	G								T	S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions