Job Description P39344 Confidence 0.68% Date Thu Jan 5 11:59:34 GMT 2012 Rank 74 Aligned Residues 218 % Identity 15% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																			120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	A	M	L	G	K	L	I	S	D	T	G	A	A	Q	R	I	A	T	T	L	I	A	T	F	G	K	K	R	V	Q	W	A	L	V	I	T	G	L	V	V	G	L	A	M	F	F	E	V	G	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	L	P	L	V	F	T	I
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L
Template Known Secondary structure																		T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	S	S	G	L	P	L	L	Y	V	G	V	P	M	V	A	A	L	S	V	T	H	C	F	L	P	P	H	P	G	P	T	A	I	A	T	I	F	E	A	N	L	G	T	T	L	L	Y	G	F	I	I	T	I	P	T	V	I	V	A	G	P	L	F	S	K	L	L	T	R	F	E	K	A	P	P	E	G	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P
Template Known Secondary structure				T	S	S			S														.	.	.	.	.	.	.	.	.	.	.	.										S	S																										S	S				S	T	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.													.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	P	H	L	F	S	E	E	E	M	P	S	F	W	N	S	I	F	A	A	V	I	P	V	I	L	M	A	I	A	A	V	C	E	I	T	L	P	K	T	N	T	V	R	L	F	F	E	F	V	G	N	P	A	V	A	L	F	I	A	I	V	I	A	I	F	T	L	G	R	R	N	G	R	T	I	E	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T
Template Known Secondary structure					T	T	T		S	T																														S		S	S																	T														T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		289	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	I	I	G	D	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	W	Q	S	V	I	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions