 |
Job Description | P0A6L0 | Confidence | 93.90% | Date | Thu Jan 5 11:03:24 GMT 2012 |
Rank | 133 | Aligned Residues | 72 |
% Identity | 18% | Template | c3tdmD_ |
PDB info |
PDB header:de novo protein | Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel |
PDBTitle: computationally designed tim-barrel protein, halfflr
|
Resolution | 2.40 Å |
|
 |
  |   |
151 | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
|
. | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | R | K | A | S | E | I | S | I | K | A | G | A | D | F | I | K | T | . |
. |
. |
S | T | G | K | V | A | V | N | A | T | P | E | S | A | R | I | M | M | E | V | I | R | D | M | G | V | E | K | T | V | G | F | K | P | A | G | G | V | R | T | A | E | D | A | Q | K | Y | L | A | I | A | D | E | L | F | G | A | D | W |
Query Conservation |   |
|   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|   |   |   |
|
|
|   |
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
Template Conservation |   |
  |   |
|   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . |   |
|
|
|
|   |   |
|
|
|   |
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |
Template Sequence |   |
L | R | D | W | V | V | E | V | E | K | R | G | A | G | E | I | L | L | T | S | I | D | R | D | G | T | K | S | G | Y | D | T | E | M | I | R | F | V | R | P | L | T | . |
. |
. |
. |
. |
. |
. |
T | L | P | I | I | A | S | G | G | A | G | K | M | E | H | F | L | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  | S | S | S |
| S | S | S | S |
|
|
|  |  |  |  |  |  |  | G | G | G |
| . | . | . | . | . | . | . |
| S |
|  |  |  |  | S |
|
|
| S |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
|
|
|
|
|
|
|
|
|
|
|
. |
  |
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | D | A | R | H | Y | R | F | G | A | S | S | L | L |
Query Conservation |   |
|   |
|
|
|   |
|
|
|
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |
|
|   |
|   |
Template Sequence |   |
F | L | R | G | A | D | K | V | S | I | N | T | A | A |
Template Known Secondary structure |   |
 |  | T | T |
| S |  |  |
|
| S |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|