Job Description P0A6L0 Confidence 97.91% Date Thu Jan 5 11:03:24 GMT 2012 Rank 24 Aligned Residues 147 % Identity 19% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.				.	.	.	.	.	.	.
Query SS confidence																												.	.	.				.	.	.	.	.	.	.
Query Sequence		H	G	N	D	D	I	D	I	A	L	A	E	T	R	A	A	I	A	Y	G	A	D	E	V	D	V	.	.	.	V	F	P	.	.	.	.	.	.	.	Y	R	A	L	M	A	G	N	E	Q	V	G	F	D	L	V	K	A	C	K	E	A	C	A	A	A	N	V	L	L	K	V	I	I	E	T	G	E	L	K	D
Query Conservation																												.	.	.				.	.	.	.	.	.	.
Alig confidence																												.	.	.				.	.	.	.	.	.	.																								.
Template Conservation																																																																.
Template Sequence		L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	.	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T
Template Known Secondary structure					S															T	T		S										S							T		G	G	G	G	G	G														T	T		.	S	S								S		B	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.									.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		E	A	L	I	R	K	A	S	E	I	S	I	K	A	G	A	D	F	I	K	T	.	.	.	.	.	.	.	.	S	T	G	K	V	A	V	N	A	T	P	E	S	A	R	I	M	M	E	V	I	R	D	M	G	V	E	K	T	V	G	F	K	P	A	G	G	V	R	T	A	E	D	A	Q	K	Y	L	A	I	A
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																								.	.	.																								.	.
Template Conservation																																																						.	.	.																								.	.
Template Sequence		Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	.	.	.	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	.	.
Template Known Secondary structure															T	T									S		B		T	T	S		T	T	G	G	G	T	S	S														.	.	.		T	T	S						S	S			S									T	.	.
Template Predicted Secondary structure																																																						.	.	.																								.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	L	F	G	A	D	W	A	D	A	R	H	Y	R	F	G	A	S	S	L	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	R	V	D	G	V	X	L	G	R	A	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	S	S					S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													218	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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