Job Description P0A6L0 Confidence 96.86% Date Thu Jan 5 11:03:24 GMT 2012 Rank 87 Aligned Residues 164 % Identity 18% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.										.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.
Query Sequence		R	F	I	P	I	A	R	K	T	L	K	E	Q	G	T	P	E	I	R	I	A	T	V	T	N	F	P	H	G	N	D	D	I	D	I	A	L	A	E	T	R	A	A	I	A	Y	G	A	D	E	V	D	V	V	F	.	.	.	.	.	.	.	.	.	P	Y	R	A	L	M	A	G	N	E	Q	V	G	F	D	L
Query Conservation																																																									.	.	.	.	.	.	.	.	.
Alig confidence																		.							.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																		.							.	.	.	.
Template Sequence		Y	W	C	Q	S	V	T	E	L	K	A	D	F	P	D	N	.	I	V	I	A	S	I	.	.	.	.	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I
Template Known Secondary structure															T	T	S	.							.	.	.	.				S															T	T		S										S	S	G	G	G	G	T		T
Template Predicted Secondary structure																		.							.	.	.	.
Template SS confidence
		620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.		.	.	.	.	640	.					.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																												170	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	A	C	K	E	A	C	A	A	A	N	V	L	L	K	V	I	I	E	T	G	E	L	K	D	E	A	L	I	R	K	A	S	E	I	S	I	K	A	G	A	D	F	I	K	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	K	V	A
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.									.	.	.							.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.									.	.	.							.	.	.
Template Sequence		C	R	W	V	R	Q	A	V	.	Q	I	P	F	F	A	K	L	.	.	.	T	P	N	V	T	D	.	.	.	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R	T	T	Y	G	G	V	S	G
Template Known Secondary structure										.	S	S							.	.	.		S		S	S		.	.	.												T		S														B		T	T	S		B	S	S		B	T	T	T	T	B								S
Template Predicted Secondary structure										.									.	.	.							.	.	.
Template SS confidence
		695	.	.	.	.	700	.	.		.	.	.	.	.	.	.	710				.	.	.	.	.	.				.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	T	P	E	S	A	R	I	M	M	E	V	I	R	D	M	G	V	E	K	T	V	G	F	K	P	A	G	G	V	R	T	A	E	D	A	Q	K	Y	L	A	I	A	D	E	L	F	G	A	D	W	A	D	A	R	H	Y	R	F	G	A	S	S	L	L
Query Conservation
Alig confidence																			.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	I	R	P	I	A	L	R	A	V	T	T	I	A	R	A	.	.	.	L	P	G	F	P	I	L	A	T	G	G	I	D	S	A	E	S	G	L	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V
Template Known Secondary structure		G	G	G															.	.	.	S	T	T							S	S			S						.	.	.	.	.	.	.	.	.	.	.	.					T	T		S					S
Template Predicted Secondary structure																			.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.				.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.													.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions