Job Description P0A6L0 Confidence 97.58% Date Thu Jan 5 11:03:24 GMT 2012 Rank 46 Aligned Residues 134 % Identity 16% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140							.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Query Sequence		L	A	E	T	R	A	A	I	A	Y	G	A	D	E	V	D	V	V	F	P	Y	R	A	L	M	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	Q	V	G	F	D	L	V	K	A	C	K	E	A	C	A	A	A	N	V	L	L	K	V	I	I	.	.	.	.	.	.	E
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.									.	.	.	.	.	.
Template Conservation																																																																		.
Template Sequence		V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	.	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G
Template Known Secondary structure											T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	.	T	S											S	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.														.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	E	L	K	D	E	A	L	I	R	K	A	S	E	I	S	I	K	A	G	A	D	F	I	K	T	S	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	A	V	N	A	T	P	E	S	A	R	I	M	M	E	V	I	R	D	M	G	V	E	K	T	V	G	F	K	P	A	G	G	V	R	T
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																					.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation											.																																																				.	.	.	.	.	.	.
Template Sequence		P	G	Q	I	E	A	E	V	D	.	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	.	.	.	.	.	.	.	K	K	P	V	L	G	V	G	R	Y	T	D
Template Known Secondary structure		T	T	S			T	T	T		.									T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		.	.	.	.	.	.	.	S	S						S
Template Predicted Secondary structure											.																																																				.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290								.	.	.	.	.	.	.	.	.	300	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		A	E	D	A	Q	K	Y	L	A	I	A	D	E	L	F	G	A	D	W	A	D	A	R	.	H	Y	R	F	G	A	S	S	L	L
Query Conservation																									.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	K	M	I	E	.	.	.	.	.	.	.	.	.	.	.	.	I	V	T	K	G	Y	A	D	I	I	G	C	A	R	P	S
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.				T	T	S		S	B				S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.													.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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