|   |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | A | H | L | T | H | Q | Y | P | A | A | N | A | Q | V | T | A | A | P | Q | A | I | T | L | N | F | S | E | G | V | E | T | G | F | S | G | A | K | I | T | G | P | K | N | E | N | I | K | T | L | P | A | K | R | N | . |
. |
. |
. |
. |
E | Q | D | Q | K | Q | L | I | V | P | L | A | D | S | L | K | P | G | T | Y |
Query Conservation |   |
|   |   |
|   |
|
|
|
|
|   |
|
|   |
|   |   |   |
|   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |
|   |
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|
|
|   |
|
|   |   |   | . |
|
|   |   |
|   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
Template Sequence |   |
H | P | K | L | V | S | S | T | P | A | E | G | S | E | G | A | . |
A | P | A | K | I | E | L | H | F | S | E | N | L | V | T | Q | F | S | G | A | K | L | V | M | T | A | M | P | G | M | E | H | S | P | M | A | V | K | A | A | V | S | G | G | G | D | P | K | T | M | V | I | T | P | A | S | P | L | T | A | G | T | Y |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  | S |
| T | T |
|  |  | S | . |
|
| S | S |  |  |  |  |  | S | S |
|
|
| T | T | T |
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |
|  |  |  |  |  |
| S | S | T | T |  |  |  |  |  |  | S | S |
|
|
| S |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
| . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | |
. | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
  |
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | V | D | W | H | V | V | S | V | D | G | H | K | T | K | G | H | Y | T | F | S | V | K |
Query Conservation |   |
|
|   |
|   |
|   |
|   |
|
|
|   |   |   |
|   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |
|   |
|
|
|   |   |   |
|   |   |   |
|
|
|
|
Template Sequence |   |
K | V | D | W | R | A | V | S | S | D | T | H | P | I | T | G | S | V | T | F | K | V | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |
|
| T | T |
|
|
|  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
  |