Job Description P0AA57 Confidence 74.71% Date Thu Jan 5 11:12:00 GMT 2012 Rank 35 Aligned Residues 76 % Identity 11% Template c2z64C_ PDB info PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex Resolution 2.84 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.															.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.															.									.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.															.									.
Query Sequence		A	I	T	L	N	F	S	E	G	V	E	T	G	F	S	G	A	K	I	T	G	P	K	N	E	N	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	P	A	K	R	N	E	Q	D	Q	K	Q	L	.	I	V	P	L	A	D	S	L	.	K	P	G	T	Y	T	V	D	W	H	V	V	S	V
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.															.									.
Alig confidence																								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.															.									.
Template Conservation																								.
Template Sequence		H	V	E	F	I	P	R	G	N	L	K	Y	L	Y	F	N	L	F	I	S	V	N	.	S	I	E	L	P	K	R	K	E	V	L	C	H	G	H	D	D	D	Y	S	F	C	R	A	L	K	G	E	T	V	N	T	S	I	P	F	S	F	E	G	I	L	F	P	K	G	H	Y	R	C	V	A	E	A	I	A	G
Template Known Secondary structure								S	S			T	T										T	.	T													S	S	S		S	S	G	G	G	G			T	T															S	S			S											T
Template Predicted Secondary structure																								.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		111	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	H	K	T	K	G	H	Y	T	F	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	E	E	K	L	F	C	L	N	F	T	I
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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