Job Description P77202 Confidence 99.58% Date Thu Jan 5 12:26:16 GMT 2012 Rank 26 Aligned Residues 131 % Identity 19% Template c3kzqE_ PDB info PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	I	V	Y	V	F	A	D	P	F	C	P	Y	C	K	Q	F	W	Q	Q	A	R	P	W	V	D	S	G	.	.	K	V	Q	L	R	T	L	L	V	G	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	K	L	Y	Y	V	H	D	P	M	C	S	W	C	W	G	Y	K	P	T	I	E	K	L	K	Q	Q	L	P	G	V	I	Q	F	E	Y	V	V	G	G	L	A	P	D	T	N	L	P	M	P	P	E	M	Q	Q	K	L	E	G	I	W	K	Q	I	E	T	Q	L	G	T	K	F	N	Y	D	F	W	K	L
Template Known Secondary structure											T	T																		S		T	T										S	S		S				B																										T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.																									.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	K	P	E	S	P	A	T	A	A	A	I	L	A	S	K	D	P	A	K	T	W	Q	Q	Y	E	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	K	L	K	L	N	V	P	A	N	V	S	T	E	Q	M	K	V	L	S	D	N	E	K	L
Query Conservation		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	T	P	V	R	S	T	Y	Q	S	C	R	A	V	I	A	A	G	F	Q	D	S	Y	E	Q	M	L	E	A	I	Q	H	A	Y	Y	L	R	A	M	P	P	H	E	E	A	T	H	L	Q	L	A	K	E	I	G	L	N	V	Q	Q	F	K	N	D	M	D	G	T	L	L	E	G	V	F	Q	D	Q	L	S	L
Template Known Secondary structure		S			B															T	T	T															T	S				T	T												T	T												S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	D	L	G	A	N	V	T	P	A	I	Y	Y	M	S	K	E	N	T	L	Q	Q	A	V	G	L	P	D	Q	K	T	L	N	I	I	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	S	L	G	V	N	S	Y	P	S	L	V	L	Q	I	N	D	A	Y	F	P	I	E	V	D	Y	L	S	T	E	P	T	L	K	L	I
Template Known Secondary structure					T	T		S	S	S	S							T	T									S	S		S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions