 |
Job Description | P77202 | Confidence | 96.96% | Date | Thu Jan 5 12:26:16 GMT 2012 |
Rank | 175 | Aligned Residues | 135 |
% Identity | 7% | Template | c2obiA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:phospholipid hydroperoxide glutathione |
PDBTitle: crystal structure of the selenocysteine to cysteine mutant2 of human phospholipid hydroperoxide glutathione peroxidase3 (gpx4)
|
Resolution | 1.55 Å |
|
 |
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | |
|
|
. | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | Q | S | H | W | L | L | D | G | K | K | D | A | P | V | I | V | Y | V | F | A | D | P | F | C | P | Y | C | K | Q | F | W | Q | Q | A | R | P | W | V | D | . |
. |
. |
S | G | K | V | Q | L | R | T | L | L | V | G | V | I | K | P | E | S | P | A | T | A | A | A | I | L | A | S | K | D | P | A | K | T | W | Q | Q |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |   | . | . | . |   |
|   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |
|   |   |   |   |
|
|   |
|
|
|   |
|   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
I | D | G | H | M | V | N | L | D | K | Y | R | G | F | V | C | I | V | T | N | V | A | S | Q | C | G | K | T | E | V | N | Y | T | Q | L | V | D | L | H | A | R | Y | A | E | C | G | L | R | I | L | A | F | P | C | N | Q | F | G | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
Q | E | P | G | S | N | E | E | I | K | E | F |
Template Known Secondary structure |   |
T | T | S |
|  |  |  | G | G | G | G | T | T | S |  |  |  |  |  |  |  |
| S | S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |  |  |  |  |  |  |  |
|
|
| S | T | T | . | . | . | . | . | . | . | . | . |
|
|
| S |
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
179 | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | |
. | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | E | A | S | G | G | K | L | K | L | N | V | P | A | N | V | S | T | E | Q | M | K | V | L | S | D | N | E | K | L | . |
. |
. |
. |
. |
. |
M | D | D | L | G | A | N | V | T | P | A | I | Y | Y | M | S | K | E | N | T | L | Q | . |
Q | A | V | G | L | P | D | Q | K | T | L | N | I | I | M |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
| . | . | . | . | . | . |   |   |   |
|
|
|   |
|
|
|
|
|
|   |   |
|
|   |
|   |   |   | . |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|   |   |
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
Template Sequence |   |
A | A | G | Y | N | V | K | F | D | M | F | S | K | I | C | V | N | G | D | D | A | H | P | L | W | K | W | M | K | I | Q | P | K | G | K | G | I | L | G | N | A | I | K | W | N | F | T | K | F | L | I | D | K | N | G | C | V | V | K | R | Y | G | P | M | E | E | P | L | V | I | E | K | D | L |
Template Known Secondary structure |   |
 |  | T | T | T |
|
| S |  |  | B |
|
|
|
|
| S | S | T | T | S |
|  |  |  |  |  |  |  | T | S | T | T | T |
|
| S | S | S | S | S |
|
| S | T | T |
|  |  |  |  |
| T | T | S |
|  |  |  |  |  |
| T | T | S |
| T |  |  |  |  | T | T | S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|