Job Description P0A9P6 Confidence 96.28% Date Thu Jan 5 11:10:55 GMT 2012 Rank 169 Aligned Residues 127 % Identity 16% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		V	L	G	M	A	Q	T	G	S	G	K	T	A	A	F	S	L	P	L	L	Q	N	L	D	P	E	L	K	A	P	Q	I	L	V	L	A	P	T	R	E	L	A	V	Q	V	A	E	A	M	T	D	F	S	K	H	M	R	G	V	N	V	V	A	L	Y	G	G	Q	R	Y	D	V	Q	L	R	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																.	.																												.	.												.																				.	.	.	.
Template Conservation																.	.																												.	.												.
Template Sequence		L	L	M	V	G	I	Q	G	S	G	K	T	T	T	.	.	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	.	.	Y	H	Q	L	R	Q	L	L	D	R	Y	.	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y
Template Known Secondary structure								T	T	S	S					.	.										T	T	T											S	S	T			.	.									G	G	G	.	T							T	T
Template Predicted Secondary structure																.	.																												.	.												.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
			122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																										.
Query SS confidence		.																																										.
Query Sequence		.	L	R	Q	G	P	Q	I	V	V	G	T	P	G	R	L	L	D	H	L	K	R	G	T	L	D	L	S	K	L	S	G	L	V	L	D	E	A	D	E	M	L	.	R	M	G	F	I	E	D	V	E	T	I	M	A	Q	I	P	E	G	H	Q	T	A	L	F	S	A	T	M	P	E	A	I	R	R	I	T	R
Query Conservation		.																																										.
Alig confidence		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	S	K	G	V	D	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L
Template Known Secondary structure					T	T		S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S																			S								G	G	G	G	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.																									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		234	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions