169 c3dm5A_ Probab=96.28   E-value=0.08  Score=30.08  Aligned_columns=127  Identities=16%

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH----
Q ss_conf             9999289874689999999999851678828999937089999999999998401799779999788998999998----
Q batch____        46 VLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA----  121 (629)
Q Consensus        46 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lii~Pt~~La~Q~~~~l~~l~~~~~~i~v~~~~g~~~~~~~~~~----  121 (629)
                      +++++|||+|||.+  ++=|+......+...+||-+.|.--+.  .++|+.++... ++.+.....+.+...-...    
T Consensus       103 I~~vG~~G~GKTTT--~aKLA~~~~~~g~kv~li~aDt~R~aA--~eQL~~~a~~~-~vp~~~~~~~~d~~~i~~~ai~~  177 (416)
T c3dm5A_         103 LLMVGIQGSGKTTT--VAKLARYFQKRGYKVGVVCSDTWRPGA--YHQLRQLLDRY-HIEVFGNPQEKDAIKLAKEGVDY  177 (416)
T ss_dssp             EEEECCTTSSHHHH--HHHHHHHHHTTTCCEEEEECCCSSTHH--HHHHHHHHGGG-TCEEECCTTCCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHH--HHHHHHHHHHCCCCEEEEECCCCCHHH--HHHHHHHHHHH-CCCEEECCCCCCHHHHHHHHHHH
T ss_conf             99970588773468--999999999569918999618867016--99999998860-99158548857889999999999


Q ss_pred             -HHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHH
Q ss_conf             -52589899998899986886177560005511111446775-5211489999997404345501100358846999999
Q batch____       122 -LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITR  199 (629)
Q Consensus       122 -l~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~~v~de~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (629)
                       -..+++++                        ++|-+-+.+ +......+..+.....+........++........+.
T Consensus       178 ~~~~~~DvI------------------------lIDTaGR~~~d~~lm~EL~~i~~~~~p~~vllV~dA~~gq~a~~~a~  233 (416)
T c3dm5A_         178 FKSKGVDII------------------------IVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQAL  233 (416)
T ss_dssp             HHHTTCSEE------------------------EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH
T ss_pred             HHHCCCCEE------------------------EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf             996799899------------------------98188887998899999999984148421999822678788999999


Q ss_pred             HH
Q ss_conf             84
Q batch____       200 RF  201 (629)
Q Consensus       200 ~~  201 (629)
                      .+
T Consensus       234 ~F  235 (416)
T c3dm5A_         234 AF  235 (416)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99