Job Description P00934 Confidence 100.00% Date Thu Jan 5 10:57:12 GMT 2012 Rank 9 Aligned Residues 347 % Identity 15% Template d1qopb_ SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Resolution 1.4

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		19	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.								90
Predicted Secondary structure										.																																																																.	.	.	.	.	.	.
Query SS confidence										.																																																																.	.	.	.	.	.	.
Query Sequence		V	T	Q	G	L	G	K	N	.	Q	G	L	F	F	P	H	D	L	P	E	F	S	L	T	E	I	D	E	M	L	K	L	D	F	V	T	R	S	A	K	I	L	S	A	F	I	G	D	E	I	P	Q	E	I	L	E	E	R	V	R	A	A	F	A	F	P	A	P	V	A	N	V	.	.	.	.	.	.	.	E
Query Conservation										.																																																																.	.	.	.	.	.	.
Alig confidence										.													.							.	.	.	.						.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																							.							.	.	.	.						.	.	.	.	.	.	.	.
Template Sequence		L	L	N	P	Y	F	G	E	F	G	G	M	Y	V	P	Q	I	L	M	P	A	.	L	N	Q	L	E	E	.	.	.	.	A	F	V	S	A	.	.	.	.	.	.	.	.	Q	K	D	P	E	F	Q	A	Q	F	A	D	L	L	K	N	Y	A	G	R	P	T	A	L	T	K	C	Q	N	I	T	A	G	T	R
Template Known Secondary structure		S	S					T	T						S		G	G	G				.							.	.	.	.						.	.	.	.	.	.	.	.		T															T	T			S											T	T	S	S
Template Predicted Secondary structure																							.							.	.	.	.						.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30					.	.	.	.	.									.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		S	D	V	G	C	L	E	L	F	H	G	P	T	L	A	F	K	D	F	G	G	R	F	M	A	Q	M	L	T	H	I	A	G	D	K	P	V	T	I	L	T	A	T	S	G	D	T	G	A	A	V	A	H	A	F	Y	G	L	P	N	V	K	V	V	I	L	Y	P	R	G	.	.	K	I	S	P	L	Q	E	K
Query Conservation																																																																								.	.
Alig confidence																																.	.																					.																		.	.
Template Conservation																																.	.																					.
Template Sequence		T	T	L	Y	L	K	R	E	D	L	L	H	G	G	A	H	K	T	N	Q	V	L	G	Q	A	L	L	A	K	R	.	.	M	G	K	S	E	I	I	A	E	T	G	A	G	Q	H	G	V	A	S	A	.	L	A	S	A	L	L	G	L	K	C	R	I	Y	M	G	A	K	D	V	E	R	Q	S	P	N	V	F
Template Known Secondary structure									G	G	G	S	T	T	S	B	T															.	.	T	T									S	S	S								.							T
Template Predicted Secondary structure																																.	.																					.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.
Predicted Secondary structure																																															.	.	.	.	.	.																								.
Query SS confidence																																															.	.	.	.	.	.																								.
Query Sequence		L	F	C	T	L	G	G	N	I	E	T	V	A	I	D	G	D	F	D	A	C	Q	A	L	V	K	Q	A	F	D	D	E	E	L	K	V	A	L	G	L	N	S	A	N	S	.	.	.	.	.	.	I	N	I	S	R	L	L	A	Q	I	C	Y	Y	F	E	A	V	A	Q	L	P	Q	E	.	T	R	N	Q	L
Query Conservation																																															.	.	.	.	.	.																								.
Alig confidence											.	.																																			.	.	.	.	.	.																								.
Template Conservation											.	.
Template Sequence		R	M	R	L	M	G	A	E	V	.	.	I	P	V	H	S	G	S	A	T	L	K	D	A	C	N	E	A	L	R	D	W	S	G	S	Y	E	T	A	H	Y	M	L	G	T	A	A	G	P	H	P	Y	P	T	I	V	R	E	F	Q	R	M	I	G	E	E	T	K	A	Q	I	L	D	K	E	G	R	L	P	D
Template Known Secondary structure						T	T				.	.					S	T	T	S	S																T	T	T							S	S		S	S	T	T								T	T	T															S	S			S
Template Predicted Secondary structure											.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	S	V	P	S	G	N	F	G	D	L	T	A	G	L	L	A	K	S	L	G	L	P	V	K	R	F	I	A	A	T	N	V	N	D	T	V	P	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	D	G	Q	W	S	P	K	A	T	Q	A	T	L	S	N	A	M	D
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	I	A	C	V	G	G	G	S	N	A	I	G	M	F	A	D	F	I	N	D	T	S	V	G	L	I	G	V	E	P	G	G	H	G	I	E	T	G	E	H	G	A	P	L	K	H	G	R	V	G	I	Y	F	G	M	K	A	P	M	M	Q	T	A	D	G	Q	I	E	E	S	Y	S	I	S	A	G	L	D
Template Known Secondary structure								S	S	S								G	G	G	T	T		T	T	S										T	B	G	G	G	T	B	S							S						T								B		T	T	S		B						S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																													.																				.	.	.	.
Query SS confidence																																													.																				.	.	.	.
Query Sequence		V	S	Q	P	N	N	W	P	R	V	E	E	L	F	R	R	K	I	W	Q	L	K	E	L	G	Y	A	A	V	D	D	E	T	T	Q	Q	T	M	R	E	L	K	E	.	L	G	Y	T	S	E	P	H	A	A	V	A	Y	R	A	L	R	D	Q	.	.	.	.	L	N	P	G	E	Y	G	L	F	L	G	T	A
Query Conservation																																													.																				.	.	.	.
Alig confidence			.	.																		.	.	.	.	.																			.																				.	.	.	.
Template Conservation			.	.																		.	.	.	.	.
Template Sequence		F	.	.	P	S	V	G	P	Q	H	A	Y	L	N	S	I	G	R	A	D	.	.	.	.	.	Y	V	S	I	T	D	D	E	A	L	E	A	F	K	T	L	C	R	H	E	G	I	I	P	A	L	E	S	S	H	A	L	A	H	A	L	K	M	M	R	E	Q	P	E	K	E	Q	L	L	V	V	N	L	S	G
Template Known Secondary structure			.	.	S	S											T	T	S	S		.	.	.	.	.																					S			B																		S	T	T	S										B
Template Predicted Secondary structure			.	.																		.	.	.	.	.
Template SS confidence
		306			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.						.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	A	K	F	K	E	S	V	E	A	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	D	K	D	I	F	T	V	H	D	I	L
Template Known Secondary structure		B		G	G	G
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions