Job Description P00934 Confidence 100.00% Date Thu Jan 5 10:57:12 GMT 2012 Rank 15 Aligned Residues 291 % Identity 16% Template c3r0zA_ PDB info PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium Resolution 2.40 Å

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		83	.	.	.	.	.	.																90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	P	V	A	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	D	V	G	C	L	E	L	F	H	G	P	.	T	L	A	F	K	D	F	G	G	R	F	M	A	Q	M	L	T	H	I	A	G	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	D	V	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	G	Q	T	I	N	G	E	M	L	L	K	K	D	S	H	L	A	I	S	G	S	I	K	A	R	G	G	I	Y	E	V	L	T	H	A	E	K	L	A	L	E	A	G	L	L	T	T	D	D	D	Y	S	V	L	L	S	P	E	F	K	Q	F
Template Known Secondary structure																									S							G	G	G		T	T	T	S	B	T																					T	S			T	T	S		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
				126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	P	V	T	I	L	T	A	T	S	G	D	T	G	A	A	V	A	H	A	F	Y	G	L	P	N	V	K	V	V	I	L	Y	P	R	G	K	I	S	P	L	Q	E	K	L	F	C	T	L	G	G	N	I	E	T	V	A	I	D	G	D	F	D	A	C	Q	A	L	V	K	Q	A	F	D	D	E	E	L	K
Query Conservation		.	.
Alig confidence		.	.																				.																.																	.	.
Template Conservation																							.																.																	.	.
Template Sequence		F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	.	S	A	C	I	G	F	K	V	T	V	H	M	S	A	D	.	A	R	A	W	K	K	A	K	L	R	S	H	G	V	T	V	.	.	V	E	Y	E	D	D	Y	G	V	A	V	E	Q	G	R	K	A	A	Q	S	D	P	N	C
Template Known Secondary structure			T	T	S							S	S										.					T									T	T	.	S											T	T				.	.				S	S		T	T												T		T	T
Template Predicted Secondary structure																							.																.																	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.						.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.																															.											.
Query SS confidence																																			.	.	.	.	.																															.											.
Query Sequence		V	A	L	G	L	N	S	A	N	S	I	N	I	S	R	L	L	A	Q	I	C	Y	Y	F	E	A	V	A	Q	L	P	Q	E	.	.	.	.	.	T	R	N	Q	L	V	V	S	V	P	S	G	N	F	G	D	L	T	A	G	L	L	A	K	S	L	G	L	P	V	.	K	R	F	I	A	A	T	N	V	N	.
Query Conservation																																			.	.	.	.	.																															.											.
Alig confidence					.	.	.	.	.	.	.	.																							.	.	.	.	.																															.											.
Template Conservation					.	.	.	.	.	.	.	.
Template Sequence		F	F	I	.	.	.	.	.	.	.	.	S	R	T	L	F	L	G	Y	A	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	V	V	D	A	S	H	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	N	V	H	C	F	F	A	E	P	T	H	S
Template Known Secondary structure					.	.	.	.	.	.	.	.										T													T				S	S	S	S									S	S	S															G	G	G									T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.									.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.							.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.																																																				.
Query SS confidence																				.	.	.	.	.	.																																																				.
Query Sequence		D	T	V	P	R	F	L	H	D	G	Q	W	S	P	K	A	T	Q	.	.	.	.	.	.	A	T	L	S	N	A	M	D	V	S	Q	P	N	N	W	P	R	V	E	E	L	F	R	R	K	I	W	Q	L	K	E	L	G	Y	A	A	V	D	D	E	T	T	Q	Q	T	M	R	E	L	K	E	.	L	G	Y	T
Query Conservation																				.	.	.	.	.	.																																																				.
Alig confidence																				.	.	.	.	.	.																.	.												.	.	.	.	.																			.
Template Conservation																																									.	.												.	.	.	.	.
Template Sequence		P	C	M	L	L	G	V	Y	T	G	L	H	D	A	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	.	.	V	G	R	A	M	E	R	L	L	D	G	.	.	.	.	.	L	Y	T	L	D	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R
Template Known Secondary structure											S		G	G	G			S	T	T	T	T						S		G	G	G			S	S					.	.						G	G	G		S		.	.	.	.	.
Template Predicted Secondary structure																																									.	.												.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.						.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.																.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	P	H	A	A	V	A	Y	R	A	L	R	D	Q	L	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	Y	G	L	F	L	G	T	A	H	P	A	K	F	K	E	S	V	E	A	I	L	G	E
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	P	S	A	L	A	G	M	A	G	P	Q	R	I	C	A	S	V	A	Y	Q	Q	R	H	G	F	S	Q	T	Q	L	G	N	A	T	H	L	V	W	A	T	G	G	G	M	V	P	E	D	E	M	E	Q	Y	L	A	K
Template Known Secondary structure				G	G	G	G	G	G	G	G															T	T								T									B		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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