Job Description P00934 Confidence 100.00% Date Thu Jan 5 10:57:12 GMT 2012 Rank 17 Aligned Residues 299 % Identity 16% Template c3l6cA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:serine racemase; PDBTitle: x-ray crystal structure of rat serine racemase in complex with2 malonate a potent inhibitor Resolution 2.20 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																		.	.									.	.	.	.	.	.	.																								.
Query SS confidence																		.	.									.	.	.	.	.	.	.																								.
Query Sequence		E	I	P	Q	E	I	L	E	E	R	V	R	A	A	F	A	.	.	F	P	A	P	V	A	N	V	.	.	.	.	.	.	.	E	S	D	V	G	C	L	E	L	F	H	G	P	T	L	A	F	K	D	F	G	G	R	.	F	M	A	Q	M	L	T	H	I	A	G	D	K	P	V	T	I	L	T	A	T	S	G
Query Conservation																		.	.									.	.	.	.	.	.	.																								.
Alig confidence																		.	.									.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		D	I	S	F	A	D	V	E	K	A	H	L	N	I	Q	D	S	V	H	L	T	P	V	L	T	S	S	I	L	N	Q	I	A	G	R	N	L	F	F	K	C	E	L	F	Q	K	T	G	S	F	K	I	R	G	A	L	N	A	I	R	G	L	I	P	D	T	L	E	G	K	P	K	A	V	V	T	H	S	S	G
Template Known Secondary structure		S														T	T	T	S																T	S							G	G	G	S	G	G	G	B	T	T												S		S	S	S	T	T			S							S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	G	A	A	V	A	H	A	F	Y	G	L	P	N	V	K	V	V	I	L	Y	P	R	G	K	I	S	P	L	Q	E	K	L	F	C	T	L	G	G	N	I	E	T	V	A	I	D	G	D	F	D	A	C	Q	A	L	V	K	Q	A	F	D	D	E	E	L	K	V	A	L	G	L	N	S	A	N	S	I	N
Query Conservation
Alig confidence									.																		.																	.	.																															.	.	.	.	.
Template Conservation									.																		.																	.	.																															.	.	.	.	.
Template Sequence		N	H	G	Q	A	L	T	.	Y	A	A	K	L	E	G	I	P	A	Y	I	V	V	P	Q	T	.	A	P	N	C	K	K	L	A	I	Q	A	Y	G	A	S	I	.	.	V	Y	S	E	P	S	D	E	S	R	E	N	V	A	Q	R	I	I	Q	E	T	E	G	I	L	V	H	P	N	Q	.	.	.	.	.	E
Template Known Secondary structure									.						T	T									T	T	.	S											T	T				.	.					S	S																T						S	S	S	.	.	.	.	.	S
Template Predicted Secondary structure									.																		.																	.	.																															.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.
Predicted Secondary structure																																																																.													.
Query SS confidence																																																																.													.
Query Sequence		I	S	R	L	L	A	Q	I	C	Y	Y	F	E	A	V	A	Q	L	P	Q	E	T	R	N	Q	L	V	V	S	V	P	S	G	N	F	G	D	L	T	A	G	L	L	A	K	S	L	G	L	P	V	K	R	F	I	A	A	T	N	V	N	D	.	T	V	P	R	F	L	H	D	G	Q	W	S	.	P	K	A	T
Query Conservation																																																																.													.
Alig confidence																				.	.	.	.																																									.													.
Template Conservation																				.	.	.	.
Template Sequence		P	A	V	I	A	G	Q	G	T	I	A	L	E	V	L	N	Q	V	.	.	.	.	P	L	V	D	A	L	V	V	P	V	G	G	G	G	M	V	A	G	I	A	I	T	I	K	T	L	K	P	S	V	K	V	Y	A	A	E	P	S	N	A	D	D	C	Y	Q	S	K	L	K	G	E	L	T	P	N	L	H	P
Template Known Secondary structure									T											.	.	.	.	T	T									S	S	S															T	T	S								G	G	G										T	S					S	S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.						.
Predicted Secondary structure																																																						.																						.	.	.	.	.
Query SS confidence																																																						.																						.	.	.	.	.
Query Sequence		Q	A	T	L	S	N	A	M	D	V	S	Q	P	N	N	W	P	R	V	E	E	L	F	R	R	K	I	W	Q	L	K	E	L	G	Y	A	A	V	D	D	E	T	T	Q	Q	T	M	R	E	L	K	E	.	L	G	Y	T	S	E	P	H	A	A	V	A	Y	R	A	L	R	D	Q	L	N	.	.	.	.	.	P
Query Conservation																																																						.																						.	.	.	.	.
Alig confidence																		.	.	.											.	.	.	.	.																			.																						.	.	.	.	.
Template Conservation																		.	.	.											.	.	.	.	.
Template Sequence		P	E	T	I	A	D	G	V	K	S	S	I	G	L	N	T	.	.	.	W	P	I	I	R	D	L	V	D	D	.	.	.	.	.	V	F	T	V	T	E	D	E	I	K	Y	A	T	Q	L	V	W	E	R	M	K	L	L	I	E	P	T	A	G	V	G	L	A	A	V	L	S	Q	H	F	Q	T	V	S	P	E
Template Known Secondary structure					S		G	G	G		S				T	T	T	.	.	.											.	.	.	.	.																										G	G	G	G							T	S	T	G	G	G	G	S		T	T
Template Predicted Secondary structure																		.	.	.											.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	Y	G	L	F	L	G	T	A	H	P	A	K	F	K	E	S	V
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		V	K	N	I	C	I	V	L	S	G	.	G	N	V	D	L	T	S	L
Template Known Secondary structure											B	.					S	S
Template Predicted Secondary structure												.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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