Job Description P00934 Confidence 100.00% Date Thu Jan 5 10:57:12 GMT 2012 Rank 12 Aligned Residues 284 % Identity 14% Template c2rkbE_ PDB info PDB header:lyase Chain: E: PDB Molecule:serine dehydratase-like; PDBTitle: serine dehydratase like-1 from human cancer cells Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		84	.	.	.	.	.								90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.							.
Query SS confidence								.	.	.	.	.	.	.							.
Query Sequence		A	P	V	A	N	V	.	.	.	.	.	.	.	E	S	D	V	G	C	.	L	E	L	F	H	G	P	T	L	A	F	K	D	F	G	G	R	F	M	A	Q	M	L	T	H	I	A	G	D	K	P	V	T	I	L	T	A	T	S	G	D	T	G	A	A	V	A	H	A	F	Y	G	L	P	N	V	K	V	V	I
Query Conservation								.	.	.	.	.	.	.							.
Alig confidence								.	.	.	.	.	.	.							.						.														.	.	.																												.
Template Conservation																											.														.	.	.																												.
Template Sequence		T	P	L	L	E	S	W	A	L	S	Q	V	A	G	M	P	V	F	L	K	C	E	N	V	Q	.	P	S	G	S	F	K	I	R	G	I	G	H	F	.	.	.	C	Q	E	M	A	K	K	G	C	R	H	L	V	C	S	S	G	G	N	A	G	I	A	A	A	Y	A	.	A	R	K	L	G	I	P	A	T	I
Template Known Secondary structure															T	S							G	G	G	S	.	T	T	S	B	T									.	.	.							T	T										S										.					T
Template Predicted Secondary structure																											.														.	.	.																												.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	P	R	G	K	I	S	P	L	Q	E	K	L	F	C	T	L	G	G	N	I	E	T	V	A	I	D	G	D	F	D	A	C	Q	A	L	V	K	Q	A	F	D	D	E	E	L	K	V	A	L	G	L	N	S	A	N	S	I	N	I	S	R	L	L	A	Q	I	C	Y	Y	F	E	A	V	A	Q	L	P	Q
Query Conservation
Alig confidence							.																	.	.																															.	.	.	.	.																				.	.
Template Conservation							.																	.	.																															.	.	.	.	.																				.	.
Template Sequence		V	L	P	E	S	.	T	S	L	Q	V	V	Q	R	L	Q	G	E	G	A	E	V	.	.	Q	L	T	G	K	V	W	D	E	A	N	L	R	A	Q	E	L	A	K	R	D	G	W	E	N	V	P	P	F	D	.	.	.	.	.	H	P	L	I	W	K	G	H	A	S	L	V	Q	E	L	K	A	V	L	.	.
Template Known Secondary structure					T	T	.												T	T				.	.					S	S														S	T	T						S	S		.	.	.	.	.	S																		S	.	.
Template Predicted Secondary structure							.																	.	.																															.	.	.	.	.																				.	.
Template SS confidence
		93	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																										.																			.
Query SS confidence																										.																			.
Query Sequence		E	T	R	N	Q	L	V	V	S	V	P	S	G	N	F	G	D	L	T	A	G	L	L	A	.	K	S	L	G	L	P	V	K	R	F	I	A	A	T	N	V	N	D	.	T	V	P	R	F	L	H	D	G	Q	W	S	P	K	A	T	Q	A	T	L	S	N	A	M	D	V	S	Q	P	N	N	W	P	R	V	E
Query Conservation																										.																			.
Alig confidence		.																								.																			.																															.	.
Template Conservation		.																																																																										.	.
Template Sequence		.	R	T	P	P	G	A	L	V	L	A	V	G	G	G	G	L	L	A	G	V	V	A	G	L	L	E	V	G	W	Q	H	V	P	I	I	A	M	E	T	H	G	A	H	C	F	N	A	A	I	T	A	G	K	L	V	T	L	P	D	I	T	S	V	A	K	S	L	G	A	K	T	V	A	.	.	A	R	A	L
Template Known Secondary structure		.	S	S			S							S	S	S														T		T	T	S								T	T	B										T	S					S				S	S		G	G	G			S	S			.	.
Template Predicted Secondary structure		.																																																																										.	.
Template SS confidence
			163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.												.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																		.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	F	R	R	K	I	W	Q	L	K	E	L	G	Y	A	A	V	D	D	E	T	T	Q	Q	T	M	R	E	L	K	E	.	L	G	Y	T	S	E	P	H	A	A	V	A	Y	R	A	L	R	D	.	.	.	.	.	.	.	.	.	.	.	Q	L	N	P	G	E	Y	G	L	F	L	G	T	A	H	P	A	K
Query Conservation																																		.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																			.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		E	C	M	Q	V	C	K	I	H	.	.	.	.	.	S	E	V	V	E	D	T	E	A	V	S	A	V	Q	Q	L	L	D	D	E	R	M	L	V	E	P	A	C	G	A	A	L	A	A	I	Y	S	G	L	L	R	R	L	Q	A	E	G	C	L	P	P	S	L	T	S	V	V	V	I	V	C	G	G	N	N	I
Template Known Secondary structure			G	G	G	T	S				.	.	.	.	.																																					T	S								T	T	S	S		S	S		S								B		S	S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		382	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	E	S	V	E	A	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	R	E	L	Q	A	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions