Job Description P00934 Confidence 100.00% Date Thu Jan 5 10:57:12 GMT 2012 Rank 14 Aligned Residues 301 % Identity 16% Template c2gn0A_ PDB info PDB header:lyase Chain: A: PDB Molecule:threonine dehydratase catabolic; PDBTitle: crystal structure of dimeric biodegradative threonine deaminase (tdcb)2 from salmonella typhimurium at 1.7 a resolution (triclinic form with3 one complete subunit built in alternate conformation) Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.								.	.	.	.	.	.	.
Query SS confidence																		.	.								.	.	.	.	.	.	.
Query Sequence		I	P	Q	E	I	L	E	E	R	V	R	A	A	F	A	F	.	.	P	A	P	V	A	N	V	.	.	.	.	.	.	.	E	S	D	V	G	C	L	E	L	F	H	G	P	T	L	A	F	K	D	F	G	G	R	F	M	A	Q	M	L	T	H	I	A	G	D	K	P	V	T	I	L	T	A	T	S	G	D	T
Query Conservation																		.	.								.	.	.	.	.	.	.
Alig confidence																		.	.								.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																											.	.	.
Template Sequence		V	A	I	E	D	I	L	E	A	K	K	R	L	A	G	K	I	Y	K	T	G	M	P	R	S	N	Y	F	S	E	R	C	K	G	E	I	F	L	K	F	E	N	M	Q	R	T	G	S	F	I	R	G	A	F	N	K	L	.	.	.	S	S	L	T	E	A	E	K	R	K	G	V	V	A	C	S	A	G	N	H
Template Known Secondary structure		S													T	T	T	S							B									T	S							G	G	G	S	G	G	G	B										.	.	.			S							T							S	S
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	V	A	H	A	F	Y	G	L	P	N	V	K	V	V	I	L	Y	P	R	G	K	I	S	P	L	Q	E	K	L	F	C	T	L	G	G	N	I	E	T	V	A	I	D	G	D	F	D	A	C	Q	A	L	V	K	Q	A	F	D	D	E	E	L	K	V	A	L	G	L	N	S	A	N	S	I	N	I	S
Query Conservation
Alig confidence									.																.																	.	.																															.	.	.	.	.
Template Conservation									.																.																	.	.																															.	.	.	.	.
Template Sequence		A	Q	G	V	S	L	S	.	C	A	M	L	G	I	D	G	K	V	V	M	P	K	G	.	A	P	K	S	K	V	A	A	T	C	D	Y	S	A	E	V	.	.	V	L	H	G	D	N	F	N	D	T	I	A	K	V	S	E	I	V	E	T	E	G	R	I	F	I	P	P	Y	D	.	.	.	.	.	D	P	K
Template Known Secondary structure									.					T									T	T	.	S												S				.	.					S	S																						S	S	S	.	.	.	.	.	S
Template Predicted Secondary structure									.																.																	.	.																															.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.						.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		R	L	L	A	Q	I	C	Y	Y	F	E	A	V	A	Q	L	P	Q	E	T	R	N	Q	L	V	V	S	V	P	S	G	N	F	G	D	L	T	A	G	L	L	A	K	S	L	G	L	P	V	K	R	F	I	A	A	T	N	V	N	D	.	T	V	P	R	F	L	H	D	G	Q	W	S	P	K	A	T	Q	A	T
Query Conservation																																																														.
Alig confidence																		.	.	.	.																																									.
Template Conservation																		.	.	.	.
Template Sequence		V	I	A	G	Q	G	T	I	G	L	E	I	M	E	D	L	.	.	.	.	Y	D	V	D	N	V	I	V	P	I	G	G	G	G	L	I	A	G	I	A	I	A	I	K	S	I	N	P	T	I	K	V	I	G	V	Q	A	E	N	V	H	G	M	A	A	S	Y	Y	T	G	E	I	T	T	H	R	T	T	G	T
Template Known Secondary structure																		.	.	.	.	T	T									S	S	S															T	T	S								T	T	B										T	S						S	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.					.	.	.	370	.
Predicted Secondary structure																																																			.																						.	.	.	.
Query SS confidence																																																			.																						.	.	.	.
Query Sequence		L	S	N	A	M	D	V	S	Q	P	N	N	W	P	R	V	E	E	L	F	R	R	K	I	W	Q	L	K	E	L	G	Y	A	A	V	D	D	E	T	T	Q	Q	T	M	R	E	L	K	E	.	L	G	Y	T	S	E	P	H	A	A	V	A	Y	R	A	L	R	D	Q	L	N	.	.	.	.	P	G	E	Y	G
Query Conservation																																																			.																						.	.	.	.
Alig confidence													.	.														.	.	.	.	.																			.																						.	.	.	.
Template Conservation													.	.														.	.	.	.	.
Template Sequence		L	A	D	G	C	D	V	S	R	P	G	.	.	N	L	T	Y	E	I	V	R	E	L	V	D	D	.	.	.	.	.	I	V	L	V	S	E	D	E	I	R	N	S	M	I	A	L	I	Q	R	N	K	V	I	T	E	G	A	G	A	L	A	C	A	A	L	L	S	G	K	L	D	S	H	I	Q	N	R	K	T
Template Known Secondary structure		S		G	G	G			S	S			.	.														.	.	.	.	.																										T	G	G	G									T	T	T					T	T	S
Template Predicted Secondary structure													.	.														.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	L	G	T	A	H	P	A	K	F	K	E	S	V	E	A	I	L	G
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		V	S	I	I	S	G	.	G	N	I	D	L	S	R	V	S	Q	I	T	G
Template Known Secondary structure							B	.
Template Predicted Secondary structure								.
Template SS confidence
		307	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions