Job Description P00934 Confidence 100.00% Date Thu Jan 5 10:57:12 GMT 2012 Rank 13 Aligned Residues 342 % Identity 17% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.
Query Sequence		Q	G	L	F	F	P	H	D	L	P	E	F	S	L	T	E	I	D	E	M	L	K	L	D	F	V	T	R	S	A	K	I	L	S	A	F	I	G	D	E	I	P	Q	E	I	L	E	E	R	V	R	A	A	F	A	F	P	A	P	V	A	N	V	.	.	.	.	.	.	.	.	E	S	D	V	G	C	L	E	L
Query Conservation																																																																	.	.	.	.	.	.	.	.
Alig confidence														.							.	.	.	.						.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation														.							.	.	.	.						.	.	.	.	.	.	.	.
Template Sequence		G	G	R	Y	V	P	E	T	L	I	P	A	.	L	E	E	L	E	A	.	.	.	.	A	Y	R	E	A	.	.	.	.	.	.	.	.	K	K	D	P	A	F	L	E	E	L	D	H	Y	L	R	Q	F	A	G	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	A	Q	V	F	L	K	R	E
Template Known Secondary structure								T	T	T				.							.	.	.	.						.	.	.	.	.	.	.	.																	T	T			S														T	S	S							G
Template Predicted Secondary structure														.							.	.	.	.						.	.	.	.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.					.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		F	H	G	P	T	L	A	F	K	D	F	G	G	R	F	M	A	Q	M	L	T	H	I	A	G	D	K	P	V	T	I	L	T	A	T	S	G	D	T	G	A	A	V	A	H	A	F	Y	G	L	P	N	V	K	V	V	I	L	.	.	.	Y	P	R	G	K	I	S	P	L	Q	E	K	L	F	C	T	L	G	G
Query Conservation																																																												.	.	.
Alig confidence															.	.																																.												.	.	.					.
Template Conservation															.	.																																.																			.
Template Sequence		D	L	L	H	T	G	A	H	K	I	N	N	T	.	.	L	G	Q	A	L	L	A	R	R	X	G	K	R	R	V	I	A	E	T	G	A	G	Q	H	G	V	S	V	A	T	V	.	A	A	L	F	G	L	E	C	V	V	Y	X	G	E	E	D	V	R	.	R	Q	A	L	N	V	F	R	X	K	L	L	G	A
Template Known Secondary structure		G	G	S	G	G	G	B	T	T					.	.											T									S	S	S										.					T														.	T											T	T
Template Predicted Secondary structure															.	.																																.																			.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.					.	.	.	.	.																							.
Query SS confidence																																								.					.	.	.	.	.																							.
Query Sequence		N	I	E	T	V	A	I	D	G	D	F	D	A	C	Q	A	L	V	K	Q	A	F	D	D	E	E	L	K	V	A	L	G	L	N	S	A	N	S	.	I	N	I	S	.	.	.	.	.	R	L	L	A	Q	I	C	Y	Y	F	E	A	V	A	Q	L	P	Q	E	T	R	N	.	Q	L	V	V	S	V	P	S	G
Query Conservation																																								.					.	.	.	.	.																							.
Alig confidence				.	.																																			.					.	.	.	.	.																							.
Template Conservation				.	.
Template Sequence		E	V	.	.	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D	W	I	T	N	V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P	X	X	V	R	D	F	Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	F	G	R	L	P	D	A	L	I	A	A	V	G
Template Known Secondary structure				.	.					S	T	T	S	S															T	T	T	T								S	S	S	S	T	T										T															S	S			S							S
Template Predicted Secondary structure				.	.
Template SS confidence
		177	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure															.																													.	.
Query SS confidence															.																													.	.
Query Sequence		N	F	G	D	L	T	A	G	L	L	A	K	S	.	L	G	L	P	V	K	R	F	I	A	A	T	N	V	N	D	T	V	P	R	F	L	H	D	G	Q	W	S	.	.	P	K	A	T	Q	A	T	L	S	N	A	M	D	V	S	Q	P	N	N	W	P	R	V	E	E	L	F	R	R	K	I	W	Q	L	K	E
Query Conservation															.																													.	.
Alig confidence															.																													.	.																																		.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	G	S	N	A	I	G	L	F	A	P	F	A	Y	L	P	E	G	R	P	K	L	I	G	V	E	A	A	G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R	G	V	L	H	G	S	Y	X	Y	L	L	Y	D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	.	.	.
Template Known Secondary structure		S	S	S											T	S		T	T												T	T	S	S	S										T						T	T					B					S	B												T	S			.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																						.																				.	.	.
Query SS confidence																						.																				.	.	.
Query Sequence		L	G	Y	A	A	V	D	D	E	T	T	Q	Q	T	M	R	E	L	K	E	.	L	G	Y	T	S	E	P	H	A	A	V	A	Y	R	A	L	R	D	Q	.	.	.	L	N	P	G	E	Y	G	L	F	L	G	T	A	H	P	A	K	F	K	E	S	V	E	A	I	L	G	E
Query Conservation																						.																				.	.	.
Alig confidence		.	.																			.																				.	.	.
Template Conservation		.	.
Template Sequence		.	.	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	I	I	P	A	L	E	S	A	H	A	I	A	Y	A	A	K	V	V	P	E	X	D	K	D	Q	V	V	V	I	N	L	S	G	R	G	D	K	D	V	T	E	V	X	R	L	L	G	G
Template Known Secondary structure		.	.																					S			B															T	T	T	S		T	T									B	B	G	G	G	T							T
Template Predicted Secondary structure		.	.
Template SS confidence
				348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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