Job Description P18133 Confidence 100.00% Date Thu Jan 5 11:36:41 GMT 2012 Rank 11 Aligned Residues 303 % Identity 22% Template c1ytkA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase from thermoplasma PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase from2 thermoplasma acidophilum with nicotinate mononucleotide Resolution 2.65 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	S	L	L	D	T	D	A	Y	K	L	H	M	Q	Q	A	V	F	H	H	Y	Y	D	V	H	V	A	A	E	F	R	C	R	G	D	D	L	L	G	I	Y	A	D	A	I	R	E	Q	V	Q	A	M	Q	H	L	R	L	Q	D	D	E	Y	Q	W	L	S	A	L	P	F	F	K	A	D	Y	L	N	W	L
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	K	G	L	A	S	D	V	Y	F	E	R	T	I	S	A	I	G	D	K	C	N	D	L	R	V	A	M	E	A	T	V	S	G	P	L	D	T	W	I	N	F	T	G	L	D	E	V	L	K	L	L	E	G	L	D	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T		S	S												G	G	G	G	G	G											S			S	S															T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.											.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	F	R	F	N	P	E	Q	V	T	V	S	N	D	N	G	K	.	.	.	.	.	.	.	.	.	.	L	D	I	R	L	S	G	P	W	R	E	V	I	L	W	E	V	P	L	L	A	V	I	S	E	M	V	H	R	Y	R	S	P	Q	A	D	V	A	Q	A	L	D	T	L	E	S	K	L	V	D	F	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	L	Y	A	I	P	E	G	T	I	L	F	P	R	D	A	N	G	L	P	V	P	F	I	R	V	E	G	R	Y	C	D	F	G	M	Y	E	T	A	I	L	G	F	I	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	S	G	I	S	T	K
Template Known Secondary structure		.	.	.	.	.	.	.	.						T	T					S	B		T	T	S		B														G	G	G										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																					.	.	.	.	.	120	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	A	G	L	D	M	S	R	F	H	L	M	D	F	G	T	R	R	R	F	S	R	E	V	Q	E	T	I	V	K	R	L	Q	Q	E	S	W	F	V	G	T	S	N	Y	D	L	A	R	R	L	S	L	T	P	M	G	T	Q	A	H	E	W	F	Q	A	H	Q	Q	I	S	P	D	L	A	N	S	Q	R
Query Conservation
Alig confidence																													.	.																																									.	.	.	.	.	.	.	.
Template Conservation																													.	.																																									.	.	.	.	.	.	.	.
Template Sequence		A	S	K	V	R	L	A	A	G	D	S	P	F	F	S	F	G	I	R	R	M	H	P	A	I	S	P	.	.	M	I	D	R	S	A	Y	I	G	G	A	D	G	V	S	G	I	L	G	A	K	L	I	D	Q	D	P	V	G	T	M	P	H	A	L	S	I	M	L	G	.	.	.	.	.	.	.	.	D	E	E
Template Known Secondary structure										T	T	S							G	G	G	S		G	G	G			.	.									T	T		S												T	S																.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.																																									.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.									190	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.						.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																.	.	.	.	.
Query SS confidence																																																.	.	.	.	.
Query Sequence		A	A	L	A	A	W	L	E	E	Y	P	D	Q	L	G	I	A	L	T	D	C	I	T	M	D	A	F	L	R	D	F	G	V	E	F	A	S	R	Y	Q	G	L	R	H	D	S	.	.	.	.	.	G	D	P	V	E	W	G	E	K	A	I	A	H	Y	E	K	L	G	I	D	P	Q	S	K	T	L	V	F	S
Query Conservation																																																.	.	.	.	.
Alig confidence																																																.	.	.	.	.																				.	.
Template Conservation																																																																								.	.
Template Sequence		A	W	K	L	T	L	E	N	T	K	N	G	Q	K	S	V	L	L	I	D	T	Y	M	D	E	K	F	A	A	I	K	I	A	E	M	F	D	K	V	D	Y	I	R	L	D	T	P	S	S	R	R	G	N	F	E	A	L	I	R	E	V	R	W	E	L	A	L	R	G	R	.	.	S	D	I	K	I	M	V	S
Template Known Secondary structure									T			T	T	S								S	S	S											T	T		S											G	G	G		S																T	T		.	.	T	T	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	L	D	L	R	K	A	V	E	L	Y	R	H	F	S	S	R	V	Q	L	S	F	G	I	G	T	R	L	T	C	D	I	P	Q	V	K	P	L	N	I	V	I	K	L	V	E	C	N	G	K	P	V	A	K	L	S	D	S	P	G	K	T	I	C	H	D	K	A	F	V	R
Query Conservation
Alig confidence																		.	.	.	.												.	.	.	.																								.	.	.	.	.
Template Conservation																		.	.	.	.												.	.	.	.																								.	.	.	.	.
Template Sequence		G	G	L	D	E	N	T	V	K	K	L	R	E	A	G	A	.	.	.	.	E	A	F	G	V	G	T	S	I	S	S	.	.	.	.	A	K	P	F	D	F	A	M	D	I	V	E	V	N	G	K	P	E	T	K	R	G	K	.	.	.	.	.	M	S	G	R	K	N	V	L	R
Template Known Secondary structure		S	S													T		.	.	.	.											T	.	.	.	.														T	T						T	T	S	.	.	.	.	.			S
Template Predicted Secondary structure																		.	.	.	.												.	.	.	.																								.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320						.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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