Job Description P18133 Confidence 100.00% Date Thu Jan 5 11:36:41 GMT 2012 Rank 4 Aligned Residues 386 % Identity 33% Template c1ybeA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase Resolution 2.50 Å

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		2	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure				.																																								.									.	.
Query SS confidence				.																																								.									.	.
Query Sequence		T	Q	.	F	A	S	P	V	L	H	S	L	L	D	T	D	A	Y	K	L	H	M	Q	Q	A	V	F	H	H	Y	Y	D	V	H	V	A	A	E	F	R	C	R	.	G	D	D	L	L	G	I	Y	.	.	A	D	A	I	R	E	Q	V	Q	A	M	Q	H	L	R	L	Q	D	D	E	Y	Q	W	L	S	A	L
Query Conservation				.																																								.									.	.
Alig confidence				.																																								.									.	.
Template Conservation
Template Sequence		T	R	W	K	L	D	P	I	V	R	S	L	I	D	T	D	F	Y	K	L	L	M	L	Q	M	I	W	K	L	Y	P	E	V	D	A	T	F	S	L	I	N	R	T	K	T	V	R	L	A	E	E	I	D	E	M	E	L	R	E	Q	L	D	H	A	R	T	L	R	L	S	K	K	E	N	I	W	L	A	G	N
Template Known Secondary structure		T							S				T	T		S	B															T	T		B								S			S	S		S	T	T	T	S													T	T														S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
								78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.																																																																				.
Query SS confidence		.	.	.	.	.	.																																																																				.
Query Sequence		.	.	.	.	.	.	P	F	F	K	A	D	Y	L	N	W	L	R	E	F	R	F	N	P	E	Q	V	T	V	S	N	D	N	G	K	L	D	I	R	L	S	G	P	W	R	E	V	I	L	W	E	V	P	L	L	A	V	I	S	E	M	V	H	R	Y	R	S	P	Q	A	D	V	A	.	Q	A	L	D	T	L
Query Conservation		.	.	.	.	.	.																																																																				.
Alig confidence		.	.	.	.	.	.																														.	.																																					.
Template Conservation																																					.	.
Template Sequence		T	F	Y	G	R	S	Q	I	F	E	P	E	F	L	S	W	L	S	S	Y	Q	L	P	E	Y	E	L	F	K	R	D	G	Q	Y	E	.	.	L	N	F	H	G	R	W	M	D	T	T	L	W	E	I	P	A	L	S	I	I	N	E	L	R	S	R	S	A	M	R	S	L	G	Y	F	T	L	D	V	L	Y	A
Template Known Secondary structure			S	S	S		S			S										T												S	S				.	.					S	B					G	G	G																		T	S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		E	S	K	L	V	D	F	S	A	L	T	A	G	L	D	M	S	R	F	H	L	M	D	F	G	T	R	R	R	F	S	R	E	V	Q	.	.	E	T	I	V	K	R	L	Q	Q	E	S	W	F	V	G	T	S	N	Y	D	L	A	R	R	L	S	L	T	P	M	G	T	Q	A	H	E	W	F	Q	A	H	Q	Q
Query Conservation																																					.	.
Alig confidence																																					.	.
Template Conservation
Template Sequence		R	A	K	A	K	M	W	E	K	V	E	R	L	R	E	L	P	G	L	R	I	S	D	F	G	T	R	R	R	H	S	F	L	W	Q	R	W	C	V	E	A	L	K	E	G	I	G	P	A	F	T	G	T	S	N	V	L	L	A	M	D	S	D	L	E	A	V	G	T	N	A	H	E	L	P	M	V	V	A	A
Template Known Secondary structure															T	T		T	T								T	T	T		S																	G	G	G					S	B								T			B						T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		229	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		I	S	P	D	.	.	.	L	A	N	S	Q	R	A	A	L	A	A	W	L	E	E	Y	P	D	Q	L	G	I	A	L	T	D	C	I	T	M	D	A	F	L	R	D	F	G	V	E	F	A	S	R	Y	Q	G	L	R	H	D	S	G	D	P	V	E	W	G	E	K	A	I	A	H	Y	E	K	L	G	I	D	P
Query Conservation						.	.	.
Alig confidence						.	.	.																																												.
Template Conservation																																																				.
Template Sequence		L	A	Q	T	N	E	E	L	A	A	A	P	Y	Q	V	L	K	D	W	N	R	L	Y	G	G	N	L	L	I	V	L	P	D	A	F	G	T	A	A	F	L	R	N	A	P	E	W	V	A	D	.	W	T	G	F	R	P	D	S	A	P	P	I	E	G	G	E	K	I	I	E	W	W	R	K	M	G	R	D	P
Template Known Secondary structure					S																					G	G	G							T	T								T			G	G	G	G	G	.	S	S						S	S																T	T			G
Template Predicted Secondary structure																																																				.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		Q	S	K	T	L	V	F	S	D	N	L	D	L	R	K	A	V	E	L	Y	R	H	F	S	S	R	V	Q	L	S	F	G	I	G	T	R	L	.	.	.	.	T	C	D	I	P	Q	V	K	P	L	N	I	V	I	K	L	V	E	C	N	G	K	P	V	A	K	L	S	D	S	P	G	K	T	I	C	H	D	K
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.			.																																	.
Template Conservation																																													.																																	.
Template Sequence		R	T	K	M	L	I	F	S	D	G	L	D	V	D	A	I	V	D	T	Y	R	H	F	E	G	R	V	R	M	S	F	G	W	G	T	N	L	T	N	D	F	A	G	.	C	A	P	L	K	P	I	S	I	V	C	K	V	S	D	A	N	G	R	P	A	V	K	L	S	D	N	P	Q	K	A	T	.	G	D	P
Template Known Secondary structure		G	G	S						T	T														T	T	T	S															T	T	.																	T	T					B			S	S	G	G	G		B	.	S
Template Predicted Secondary structure																																													.																																	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.
		382	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	V	R	A	L	R	K	A	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	V	E	R	Y	L	K	F	F	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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