Job Description P76186 Confidence 2.35% Date Thu Jan 5 12:20:15 GMT 2012 Rank 95 Aligned Residues 147 % Identity 14% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	S	L	R	N	L	P	W	F	R	A	T	L	A	Q	W	R	Y	A	L	R	N	T	I	A	M	C	L	A	L	T	V	A	Y	Y	L	N	L	D	E	P	Y	W	A	M	T	S	A	A	V	V	S	F	P	T	V	G	G	V	I	S	K	S	L	G	R	I	A	G	S	L	L	G	A	I	A	A	L	L
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	V	R	L	P	S	S	F	L	P	D	S	G	N	Q	A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	V	I	G	A	L	L	A	A	T
Template Known Secondary structure					S	S		B		S	S					T	T																			T	T		S	S	S					G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.																				.	.	.	.	.	610	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	G	H	T	L	N	E	P	W	F	F	L	L	S	M	S	A	W	L	G	F	C	T	W	A	C	A	H	F	T	N	N	V	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	Q	L	A	G	Y	T	A	A	I	I	A	F	P	M	V	N	I	T	E	A	S	Q
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S
Template Known Secondary structure			T	T			B																														T	T	S	S				T	T									T	T																				T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		918	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	D	I	A	Q	A	R	V	C	E	V	I	V	G	I	L	C	G	G	M	M	M	M	I	L	P	S
Query Conservation
Alig confidence									.	.
Template Conservation									.	.
Template Sequence		G	A	Q	N	A	V	G	.	.	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P
Template Known Secondary structure									.	.												T	T	T	T	S	S	S	S
Template Predicted Secondary structure									.	.
Template SS confidence
		998	.	1000	.	.	.	.			.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions