Job Description P76186 Confidence 4.05% Date Thu Jan 5 12:20:15 GMT 2012 Rank 45 Aligned Residues 148 % Identity 9% Template c3gd8A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin-4; PDBTitle: crystal structure of human aquaporin 4 at 1.8 and its mechanism of2 conductance Resolution 1.80 Å

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		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	R	T	F	C	T	L	M	M	I	G	A	W	S	I	A	S	Q	W	D	A	G	A	N	A	L	T	L	A	A	I	S	C	V	L	Y	S	A	V	A	A	P	F	K	S	L	S	L	L	M	R	T	L	V	L	L	S	L	F	S	F	V	V	K	F	G	L	M	V	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		L	I	S	L	C	F	G	L	S	I	A	T	M	V	Q	C	F	G	H	I	S	G	G	H	.	.	.	I	N	P	A	V	T	V	A	M	V	C	T	R	K	I	S	I	A	K	S	V	F	Y	I	A	A	Q	C	L	G	A	I	I	G	A	G	I	L	Y	L	V	T	P	P	S	V	V	G	G	L	G	V	T
Template Known Secondary structure																										.	.	.		S										T	T	S	S																											S						T	T	T	T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
				433	.	.	.								.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.				.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure		.	.					.	.	.	.	.	.	.																																									.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence		.	.					.	.	.	.	.	.	.																																									.	.	.																	.	.	.	.	.	.	.	.
Query Sequence		.	.	Q	I	S	D	.	.	.	.	.	.	.	L	W	Q	F	L	L	F	L	F	P	L	L	A	T	M	Q	L	L	K	L	Q	M	P	K	F	A	A	L	W	G	Q	L	I	V	F	M	G	S	F	I	.	.	.	A	V	T	N	P	P	V	Y	D	F	A	D	F	L	N	D	.	.	.	.	.	.	.	.
Query Conservation		.	.					.	.	.	.	.	.	.																																									.	.	.																	.	.	.	.	.	.	.	.
Alig confidence		.	.					.	.	.	.	.	.	.																																									.	.	.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	V	H	G	N	L	T	A	G	H	G	L	L	V	E	L	I	I	T	F	Q	L	V	F	T	I	F	A	S	C	D	S	K	R	T	D	V	T	G	S	I	A	L	A	I	G	F	S	V	A	I	G	H	L	F	A	I	N	Y	T	G	A	S	M	N	P	A	R	S	F	G	P	A	V	I	M	G	N	W	E
Template Known Secondary structure					T	T	S																								T		T	T		S				S																																						T			T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
							493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	N	L	A	K	I	V	G	V	A	L	A	W	L	A	F	A	I	L	R	P	G
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		N	H	W	I	Y	W	V	G	P	I	I	G	A	V	L	A	G	G	L	Y	E	Y	V	F	C	P
Template Known Secondary structure		T	T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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