Job Description P76186 Confidence 2.40% Date Thu Jan 5 12:20:15 GMT 2012 Rank 90 Aligned Residues 195 % Identity 14% Template c2f2bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin aqpm; PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution Resolution 1.68 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	Q	R	L	R	Y	F	C	R	L	Y	L	Q	S	S	Q	E	L	H	R	L	Q	S	G	V	D	D	H	T	R	L	P	R	T	S	G	L	A	R	H	T	D	N	A	E	A	M	W	S	G	L	R	T	F	C	T	L	M	M	I	G	A	W	S	I	A	S	Q	W	D	A	G	A	N	A	L	T	L	A
Query Conservation
Alig confidence																																																																.	.											.	.	.
Template Conservation																																																																.	.											.	.	.
Template Sequence		I	A	E	F	I	G	T	F	I	L	V	F	F	G	A	G	S	A	A	V	T	L	M	I	A	S	G	G	T	S	P	N	P	F	N	I	G	I	G	L	L	G	G	L	G	D	W	V	A	I	G	L	A	F	G	F	A	I	A	A	S	I	.	.	Y	A	L	G	N	I	S	G	C	H	.	.	.	I	N	P
Template Known Secondary structure																											T	T				S	S	T	T			S	T	T	T	T	T	T																				.	.				T	T	T	T				.	.	.		S
Template Predicted Secondary structure																																																																.	.											.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80				.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.																					.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	S	C	V	L	Y	S	A	V	A	A	P	F	K	S	L	S	L	L	M	R	T	L	V	L	L	S	L	F	S	F	V	V	K	F	G	L	M	V	Q	I	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	W	Q	F	L	L	F	L	F	P	L	L	A	T	M	Q
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	T	I	G	L	W	S	V	K	K	F	P	G	R	E	V	V	P	Y	I	I	A	Q	L	L	G	A	A	F	G	S	F	I	F	L	Q	C	A	G	I	G	A	A	T	V	G	G	L	G	A	T	A	P	F	P	G	I	S	Y	W	Q	A	M	L	A	E	V	V	G	T	F	L	L	M	I	T	I	M	G
Template Known Secondary structure										T	T	S	S		G	G	G																									T					T	T	G	G	G						T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		453	.			.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.																				.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure				.	.																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	.	.	K	L	Q	M	P	K	F	A	A	L	W	G	Q	L	I	V	F	M	G	S	.	F	I	A	V	T	N	P	P	V	Y	D	F	A	D	F	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	L	A	K	I	V	G	V	A	L	A	W	L	A	F	A	I	L
Query Conservation				.	.																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	V	D	E	R	A	P	K	G	F	A	G	I	I	I	G	L	T	V	A	G	I	I	T	T	L	G	N	I	S	G	S	S	L	N	P	A	R	T	F	G	P	Y	L	N	D	M	I	F	A	G	T	D	L	W	N	Y	Y	S	I	Y	V	I	G	P	I	V	G	A	V	L	A	A	L	T	Y	Q	Y	L
Template Known Secondary structure			T	T	S	T	T	S		T	T																																														G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		511	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		244	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions