Job Description P76186 Confidence 26.67% Date Thu Jan 5 12:20:15 GMT 2012 Rank 7 Aligned Residues 145 % Identity 17% Template c2b5fD_ PDB info PDB header:transport protein,membrane protein Chain: D: PDB Molecule:aquaporin; PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution Resolution 3.90 Å

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		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		G	L	R	T	F	C	T	L	M	M	I	G	A	W	S	I	A	S	Q	W	D	A	G	A	N	A	L	T	L	A	A	I	S	C	V	L	Y	S	A	V	A	A	P	F	K	S	L	S	L	L	M	R	T	L	V	L	L	S	L	F	S	F	V	V	K	F	G	L	M	V	Q	I	S	D	L	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																										.	.	.																																																	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		G	I	A	W	A	F	G	G	M	I	F	V	L	V	Y	C	T	A	G	I	S	G	G	H	.	.	.	I	N	P	A	V	T	F	G	L	F	L	A	R	K	V	S	L	L	R	A	L	V	Y	M	I	A	Q	C	L	G	A	I	C	G	V	G	L	V	K	A	F	M	K	G	P	Y	N	Q	F	G	G	G	A
Template Known Secondary structure																			T	T	T	T				.	.	.		S									T	T	T	S	S																											S							S	G	G	G
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
																	438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.																			.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.																			.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	F	L	L	F	L	F	P	L	L	A	T	M	Q	L	L	K	L	Q	M	P	K	F	A	A	L	W	G	Q	L	I	V	F	M	G	S	.	F	I	A	V	T	N	P	P	V	Y	D	F	A	D	F	L	N	D	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.																			.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	V	A	L	G	Y	N	K	G	T	A	L	G	A	E	I	I	G	T	F	V	L	V	Y	T	V	F	S	A	T	D	P	K	H	V	P	I	L	A	P	L	P	I	G	F	A	V	F	M	V	H	L	A	T	I	P	I	T	G	T	G	I	N	P	A	R	S	F	G	A	A	V	I	F	N	S	N	K	V
Template Known Secondary structure						T	T	S																							T											S															T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
									493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	N	L	A	K	I	V	G	V	A	L	A	W	L	A	F	A	I	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	D	D	Q	W	I	F	W	V	G	P	F	I	G	A	A	V	A	A	A	Y	H	Q	Y	V
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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