Job Description P0ABP8 Confidence 100.00% Date Thu Jan 5 11:16:02 GMT 2012 Rank 5 Aligned Residues 233 % Identity 25% Template c3bjeA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nucleoside phosphorylase, putative; PDBTitle: crystal structure of trypanosoma brucei nucleoside phosphorylase shows2 uridine phosphorylase activity Resolution 1.44 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		A	T	P	H	I	N	A	E	M	G	D	F	A	D	V	V	L	M	P	G	D	P	L	R	A	K	Y	I	A	E	T	F	L	E	D	.	A	R	E	V	N	N	V	R	G	M	L	G	F	T	G	T	Y	K	G	R	K	I	S	V	M	G	H	G	M	G	I	P	S	C	S	I	Y	T	K	E	L	I	T	D
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		T	T	L	H	L	K	C	K	S	D	E	L	A	D	R	I	I	F	V	G	D	P	G	R	V	D	V	I	S	G	Y	F	D	K	D	S	I	R	A	S	R	D	H	R	E	I	R	F	A	T	G	T	Y	K	G	T	P	V	T	V	I	S	T	G	M	G	V	D	N	I	E	I	V	L	N	E	I	H	A	L
Template Known Secondary structure				S	S	S				G	G	G			S						S	S	T	T							T	T	S		T	T									T	T									T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		81																												.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	K	K	I	I	R	V	G	S	C	G	A	V	L	P	H	V	K	L	R	D	V	V	I	G	M	G	A	C	T	D	S	K	V	N	R	I	R	F	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	Y	D	M	E	R	G	Q	W	R	H	R	K	G	D	A	D	A	P	S	A	G	P	F	F	D	P	S	T	M	K	I	I	R	L	G	T	C	G	S	P	A	E	S	V	P	P	L	A	L	A	V	T	R	H	A	I	G	M	D	N	T	S	L	Y	Y	S	A	G	T	R	E	T	S	K	D	Q	Q	E
Template Known Secondary structure						T	T	T	T				B		T	T		T	T	S		T	T			B			G	G	G														T	T	S		T	T												S		G	G	G	G	G	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
														122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	K	D	H	D	F	A	A	I	A	D	F	D	M	V	R	N	A	V	D	A	A	K	A	L	.	.	.	.	.	.	.	.	.	G	I	D	A	R	V	G	N	L	F	S	A	D	L	F	Y	S	P	D	G	E	M	F	D	V	M	E	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	R	I	V	R	E	Q	T	G	L	R	A	I	D	I	Y	T	S	M	A	H	P	N	I	T	K	S	I	C	A	A	C	D	A	H	N	A	A	T	G	S	E	A	D	K	Q	Q	Y	V	I	G	T	T	A	T	A	S	G	F	Y	G	C	Q	G	R	R	V	G	R	F	M	K	H	L	T	V	P	N	M
Template Known Secondary structure										S	G	G	G	G	S																									T				G	G	G													S	S	S	S	G	G	G	T				G	G	G	G	G	G		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
																173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	G	I	L	G	V	E	M	E	A	A	G	I	Y	G	V	A	A	E	F	G	A	K	A	L	T	I	C	T	V	S	D	H	I	R	T	H	E	Q	T	.	T	A	A	E	R	Q	T	T	F	N	D	M	I	K	I	A	L	E	S	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation
Template Sequence		V	E	E	L	G	S	L	K	F	N	L	S	N	G	V	E	V	V	T	N	I	E	M	E	T	S	A	I	C	Y	L	S	D	M	L	G	Y	Q	A	G	A	A	C	V	V	V	S	K	R	V	G	E	K	K	M	F	L	G	D	Q	L	D	A	A	M	K	R	C	I	K	I	I	L	E	A	L	V
Template Known Secondary structure													T	T										S	S												T													S	S	T	T						T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions