Job Description P0ABP8 Confidence 99.94% Date Thu Jan 5 11:16:02 GMT 2012 Rank 29 Aligned Residues 225 % Identity 19% Template c1wtaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:5'-methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum2 pernix (r32 form) Resolution 1.78 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.							.
Predicted Secondary structure																															.	.	.	.	.																.	.	.	.	.															.					.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.																.	.	.	.	.															.					.	.	.	.	.	.
Query Sequence		H	I	N	A	E	M	G	D	F	A	D	V	V	L	M	P	G	D	P	L	R	A	K	Y	I	A	E	T	F	.	.	.	.	.	L	E	D	A	R	E	V	N	N	V	R	G	M	L	G	.	.	.	.	.	F	T	G	T	Y	K	G	R	K	I	S	V	M	G	.	H	G	M	G	.	.	.	.	.	.	I
Query Conservation																															.	.	.	.	.																.	.	.	.	.															.					.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.				.	.	.	.	.																.	.	.	.	.															.					.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.
Template Sequence		E	I	T	R	P	P	G	V	R	A	H	V	G	V	I	G	G	.	.	.	.	.	.	.	.	.	S	G	L	Y	D	P	G	I	V	E	N	P	V	E	V	K	V	S	T	P	Y	G	N	P	S	D	F	I	V	V	G	D	V	A	G	V	K	V	A	F	L	P	R	H	G	R	G	H	R	I	P	P	H	A
Template Known Secondary structure						S	T	T				S							.	.	.	.	.	.	.	.	.	G	G	G			T	T	T												T	T				S	S								T	T								T	T	T	T	T	T		S		G	G	G
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.										20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		P	S	C	S	I	Y	T	K	E	L	I	T	D	F	G	V	K	K	I	I	R	V	G	S	C	G	A	V	L	P	H	V	K	L	R	D	V	V	I	G	M	G	A	C	T	D	S	K	V	N	R	I	R	F	K	.	.	.	.	.	.	.	D	H	D	F	A	A	I	A	D	F	D	M	V	R	N	A	V	D
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence														.																																											.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		I	N	Y	R	A	N	I	W	A	L	K	A	.	L	G	V	K	W	V	I	S	V	S	A	V	G	S	L	R	E	D	Y	R	P	G	D	F	V	V	P	D	Q	F	I	D	M	T	K	N	R	R	H	Y	T	F	Y	D	G	P	V	T	V	H	V	S	M	A	D	P	F	C	E	D	L	R	Q	R	L	I	D
Template Known Secondary structure														.		T													S	S	T	T	S		T	T																S		S		S			S	S	S		B					S	S		S
Template Predicted Secondary structure														.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		141	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure													.																							.																																			.
Query SS confidence													.																							.																																			.
Query Sequence		A	A	K	A	L	G	I	D	A	R	V	.	G	N	L	F	S	A	D	L	F	Y	S	P	D	G	E	M	F	D	V	M	E	K	.	Y	G	I	L	G	V	E	M	E	A	A	G	I	Y	G	V	A	A	E	F	G	A	K	A	L	T	I	C	T	V	S	D	H	I	.	R	T	H	E	Q	T	T	A	A	E
Query Conservation													.																							.																																			.
Alig confidence													.																							.																																			.
Template Conservation
Template Sequence		S	G	R	R	L	G	Y	T	V	H	E	R	G	T	Y	V	C	I	E	G	P	R	F	S	T	R	A	E	S	R	V	W	K	D	V	F	K	A	D	I	I	G	M	T	L	V	P	E	I	N	L	A	C	E	A	Q	L	C	Y	A	T	L	A	M	V	T	D	Y	D	V	W	A	D	R	P	V	T	A	E	E
Template Known Secondary structure							T					S										S	S													T	S			S				S	S											T	T													T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
						218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	Q	T	T	F	N	D	M	I	K	I	A	L	E	S	V	L	L	G	D	K	E
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		V	E	R	V	M	I	S	N	V	E	R	A	R	R	M	L	Y	D	V	I	P	K	L	A	G	E
Template Known Secondary structure																					G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions