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Job DescriptionP23845
Confidence98.28%DateThu Jan 5 11:39:52 GMT 2012
Rank280Aligned Residues186
% Identity17%Templatec1tndA_
PDB info PDB header:binding protein(gtp)Chain: A: PDB Molecule:transducin; PDBTitle: the 2.2 angstroms crystal structure of transducin-alpha complexed with2 gtp gamma s
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40....... ..50.........60........
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Query Sequence  LRFLTCGSVDDGKSTLIGRL. LHDTRQIYEDQLSSLHNDSKR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADT
Template Known Secondary structure 
STTSSS



TT


SSTTTTT
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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   6970.........80.........90.........100......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK
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Template Sequence  IEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKD
Template Known Secondary structure  S
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STT
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   110.........120.........130.........140.........150.........160.........170.........180.........
 
   107..110.........120.........130.........140.. .......150..... ....160.........170.
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Query Sequence  RKFIIADTPGHEQYTRNMATGASTCELAILLIDARK. . . . . . . . . . . GVLDQTRRHSFIS. . . . TLLGIKHLVVAINKMD
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Template Sequence  LNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTS. IVLFLNKKD
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SGGGGGG
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SGGGGG
B
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   190.........200.........210.........220.........230.........240.........250......... 260........
 
   172 .......180.........190.........200.........210.....
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Query Sequence  L. . . . . . . . . . . . . . . . . . . VDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVAS
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Template Sequence  VFSEKIKKAHLSICFPDYNGPNTYEDAGNYIKVQFLELNMRRDVKE. IYSHMTCATDTQNVKF
Template Known Secondary structure  TTS
GGGT
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TT
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   269270.........280.........290.........300.........310.... .....320.........330
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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