Job Description P77187 Confidence 100.00% Date Thu Jan 5 12:26:10 GMT 2012 Rank 1 Aligned Residues 392 % Identity 39% Template c3dmyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli Resolution 2.07 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	A	T	I	G	S	A	K	K	H	I	P	E	S	N	L	A	V	I	S	V	N	G	L	F	A	A	R	E	A	R	Q	A	L	Q	N	D	L	N	V	M	L	F	S	D	N	V	S	V	E	D	E	L	A	L	K	Q	L	A	H	E	K	G	L	L	M	M	G	P	D	C	G	T	A	I	I	N	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	R	R	W	D	S	A	C	Q	K	L	P	D	A	N	L	A	L	I	S	V	A	G	E	Y	A	A	E	L	A	N	Q	A	L	D	R	N	L	N	V	X	X	F	S	D	N	V	T	L	E	D	E	I	Q	L	K	T	R	A	R	E	K	G	L	L	V	X	G	P	D	C	G	T	S	X	I	A	G	T
Template Known Secondary structure				S	S								S	T	T								S															T	T																									T	T						S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	C	F	G	N	A	V	R	R	G	N	I	G	I	V	G	A	S	G	T	G	S	Q	E	L	S	V	R	I	H	E	F	G	G	G	V	S	Q	L	I	G	T	G	G	R	D	L	S	E	K	I	G	G	L	M	M	L	D	A	I	G	M	L	E	N	D	P	Q	T	E	I	I	A	L	I	S	K	P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	A	F	A	N	V	X	P	E	G	N	I	G	V	I	G	A	S	G	T	G	I	Q	E	L	C	S	Q	I	A	L	A	G	E	G	I	T	H	A	I	G	L	G	G	R	D	L	S	R	E	V	G	G	I	S	A	L	T	A	L	E	X	L	S	A	D	E	K	S	E	V	L	A	F	V	S	K	P	P
Template Known Secondary structure					S														S		S													T	T											T	T	T	T	S	T	T	T	T	T												T		T	T									S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		A	P	A	V	A	R	K	V	L	E	R	A	R	A	C	R	K	P	V	V	V	C	F	L	D	R	G	E	T	P	V	D	E	Q	G	L	Q	F	A	R	.	G	T	K	E	A	A	L	K	A	V	M	L	S	G	V	K	Q	E	N	L	D	L	H	T	L	N	Q	P	L	I	A	D	V	R	A	R	L	Q	P
Query Conservation																																										.
Alig confidence																																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	A	V	R	L	K	I	V	N	A	X	K	A	T	G	K	P	T	V	A	L	F	L	G	Y	T	P	A	V	A	R	D	E	N	V	W	F	A	S	S	L	D	E	A	A	R	L	A	C	L	L	S	R	V	T	A	R	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	A	P	V
Template Known Secondary structure																		S							T	T				S	S	S			T	T					S	S																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.																.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	K	Y	I	R	G	L	F	C	G	G	T	L	C	D	E	T	M	F	A	V	M	E	K	H	G	D	V	Y	S	N	I	Q	P	D	P	E	F	R	L	K	D	I	N	R	S	I	K	H	T	F	L	D	F	G	D	D	D	F	T	N	G	K	P	H	P	M	I	D	P	T	N	R	I	S	R	L	I	E
Query Conservation
Alig confidence																																											.	.			.	.	.	.	.	.
Template Conservation																																											.	.			.	.	.	.	.	.
Template Sequence		S	S	G	F	I	C	G	L	Y	T	G	G	T	L	A	A	E	A	A	G	L	L	A	G	H	L	G	V	E	T	H	Q	H	G	X	X	L	D	A	D	S	.	.	H	Q	.	.	.	.	.	.	I	I	D	L	G	D	D	F	Y	T	V	G	R	P	H	P	X	I	D	P	T	L	R	N	Q	L	I	A	D
Template Known Secondary structure		S									S																T	T					G	G	G						T	T	.	.			.	.	.	.	.	.				T	T	S					T	T	S			T	T	T
Template Predicted Secondary structure																																											.	.			.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	D	P	E	V	A	V	I	V	M	D	F	V	L	G	F	G	S	H	E	D	P	V	G	S	T	I	E	T	I	K	E	A	K	A	I	A	A	A	E	G	R	E	L	I	I	L	A	Y	V	L	G	T	D	L	D	T	P	S	L	E	Q	Q	S	Q	M	L	L	D	A	G	V	I	L	A	S	S	S
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		L	G	A	K	P	Q	V	R	V	L	L	L	D	V	V	I	G	F	G	A	T	A	D	P	A	A	S	L	V	S	A	W	Q	K	A	C	.	A	A	R	L	D	N	Q	P	L	Y	A	I	A	T	V	T	G	T	E	R	D	P	Q	C	R	S	Q	Q	I	A	T	L	E	D	A	G	I	A	V	V	S	S	L
Template Known Secondary structure		G	G	G		T	T											S	T	T	S		S															.		T	S		T	T	S										S		T	T	S	T	T												T	T					S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	T	G	L	L	A	R	E	F	I	C	K	G	E	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	A	T	L	L	A	A	A	L	I	H	P	L	S	H	T
Template Known Secondary structure												T	S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.