Return to main results Retrieve Phyre Job Id

Job DescriptionP15078
Confidence97.05%DateThu Jan 5 11:34:36 GMT 2012
Rank1Aligned Residues425
% Identity16%Templatec3giaA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter
Resolution2.32 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   84.....90.........100.........110.........120.........130.........140.........150........ .160..
Predicted Secondary structure 







.
Query SS confidence 










































































.



Query Sequence  DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPT. AGVI
Query Conservation     



















 

 





 





 

 





 

  


  







   

  .   
Alig confidence 










































































.



Template Conservation           
   

 

           
       

  
          

    
  

 
       
       
Template Sequence  SLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGA
Template Known Secondary structure 
TTTSGGGTT


TTT
SS
Template Predicted Secondary structure 








Template SS confidence 















































































   910.........20.........30.........40.........50.........60.........70.........80........
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
Predicted Secondary structure 












Query SS confidence 















































































Query Sequence  ALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWVAES
Query Conservation 



    



 


  


  
   
         
 


  
      
   
   







  

  
      
Alig confidence 









































































......
Template Conservation                                                                        
   ......
Template Sequence  LSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLIL. . . . . .
Template Known Secondary structure  TT



T......
Template Predicted Secondary structure 





......
Template SS confidence 















































































   8990.........100.........110.........120.........130.........140.........150.........160..
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  PTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWT
Query Conservation          
    
 


 

 

















 
 


  
  
 


    
    

 
 
     
   
Alig confidence  ................................................


























.....
Template Conservation  ................................................                           .....
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLFIFAGLITIHPSYVIPDLAPSAVSG. . . . .
Template Known Secondary structure  ................................................

GGGTS


S.....
Template Predicted Secondary structure  ................................................

















.....
Template SS confidence 















































































   163......170.........180.........
 
   323......330.........340.........350...... ...360.........370.........380.........390.........400.
Predicted Secondary structure 









.




















Query SS confidence 

































.












































Query Sequence  GNLFPFLFITIACGAVSGFHALISSGTTPKMLAN. EGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLA
Query Conservation   



 

























  .
 
 
 






 

 





 
                    
Alig confidence  ....

















...








.









































...
Template Conservation  ....             
    ...     
   
      
           
                       ...
Template Sequence  . . . . MIFASAIFFLSYMGFGVI. . . TNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENA. . .
Template Known Secondary structure  ....GGGGGT...TTGGGBSSTTS
TGGG...
Template Predicted Secondary structure  .......
















...
Template SS confidence 















































































   190.........200....... ..210.........220.........230.........240.........250.........
 
   402.......410.........420.........430.........440.........450.........460.........470.........480.
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  PAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEAL
Query Conservation                                    
        


   
 
 
       
          

 
 
  
Alig confidence  .....................................................


























Template Conservation  .....................................................               
           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LAVAAKPFLGNLGFLLISIGALFSISS
Template Known Secondary structure  .....................................................
Template Predicted Secondary structure  .....................................................


Template SS confidence 















































































   260.........270.........280......
 
   482.......490.........500.........510.........520.........530.........540.........550.........560.
Predicted Secondary structure 

















Query SS confidence 















































































Query Sequence  FILTAVDAGTRAARFMLQDLLGVVSPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGM
Query Conservation 
 









 

 



                   

 


     

        
    





 







Alig confidence 


















..






























.........


















Template Conservation           

    

 
..
 

                           .........      
            
Template Sequence  AMNATIYGGANVAYSLAKD. . GELPEFFERKVWFKSTEGLYITSALGVLFAL. . . . . . . . . LFNMEGVASITSAVFMVIY
Template Known Secondary structure  TTT..SS

SS

TTS

S
T.........S
Template Predicted Secondary structure 
..











.........
Template SS confidence 















































































   287..290.........300..... ....310.........320.........330...... ...340.........350.....
 
   562.......570.........580.........590.........600.........610.........620.........630.........640.
Predicted Secondary structure 















Query SS confidence 















































































Query Sequence  ALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSGNIPSQYTESQLAQLVFN
Query Conservation 

  


 
 
 

 
  
   

  

  

  
                           
                 
Alig confidence 







































........................................
Template Conservation                                          ........................................
Template Sequence  LFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T


........................................
Template Predicted Secondary structure 






........................................
Template SS confidence 















































































   356...360.........370.........380.........390.....
 
   642.......650.........660.........670.........680.
Predicted Secondary structure 









Query SS confidence 







































Query Sequence  NRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKET
Query Conservation    
   
 
                               
Alig confidence 







































Template Conservation                    
         

          
Template Sequence  ITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYVKS
Template Known Secondary structure 





GGGTTT
Template Predicted Secondary structure 









Template SS confidence 







































   396...400.........410.........420.........430.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions