Job Description P15639 Confidence 26.81% Date Thu Jan 5 11:34:47 GMT 2012 Rank 110 Aligned Residues 83 % Identity 10% Template c2d2rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase Resolution 1.88 Å

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		12	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure						.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	V	S	.	.	D	K	A	G	I	V	E	F	A	Q	A	L	S	A	R	G	V	E	L	L	S	T	G	G	T	A	R	L	L	A	E	K	G	L	P	V	T	E	V	S	D	Y	T	G	F	P	E	M	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.															.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		L	T	L	Y	A	F	E	V	D	F	L	M	K	M	L	K	K	Y	L	K	.	.	.	.	.	.	.	.	.	D	E	R	S	T	Y	L	D	N	N	I	R	F	R	A	I	G	D	L	E	G	F	S	K	E	L	R	D	T	I	L	Q	L	E	N	D	T	R	H	F	K	D	F	T	Q	V	L	A	L	N	Y
Template Known Secondary structure																						.	.	.	.	.	.	.	.	.									T	T							S		G	G	G	S																T	T			S								S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.										.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		65	.	.	.							.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure						.	.	.	.	.	.																					.	.	.
Query SS confidence						.	.	.	.	.	.																					.	.	.
Query Sequence		D	G	R	V	.	.	.	.	.	.	K	T	L	H	P	K	V	H	G	G	I	L	G	R	R	G	Q	D	D	A	.	.	.	I	M	E	E	H	Q	I	Q	P	I	D	M	V	V	V
Query Conservation						.	.	.	.	.	.																					.	.	.
Alig confidence						.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		G	S	K	N	E	L	S	R	A	F	K	S	L	L	E	S	P	P	S	N	I	S	L	L	E	S	L	E	N	E	I	S	N	R	L	D	T	R	N	L	P	E	V	D	L	L	L	R
Template Known Secondary structure																	S			T	T	G	G	G		S								T	T	S	T	T	T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions