 |
Job Description | P15639 | Confidence | 21.04% | Date | Thu Jan 5 11:34:47 GMT 2012 |
Rank | 152 | Aligned Residues | 70 |
% Identity | 17% | Template | c1lk5C_ |
PDB info |
PDB header:isomerase | Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; |
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
|
Resolution | 1.75 Å |
|
 |
  |   |
412 | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | E | L | R | D | A | L | F | C | W | K | V | A | K | F | V | K | S | N | A | I | V | Y | A | K | N | N | M | T | I | G | I | G | A | G | Q | M | S | R | V | Y | S | A | K | I | A | G | I | K | A | A | D | E | G | L | E | V | K | G | S | S | M | A | S | D | A | F | F | P | F | R | D | G | I | D | A | A | A | A | A |
Query Conservation |   |
  |
|   |   |
|
|   |
|
|
|   |
|   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |
|
|   |   |
|   |   |
|
|   |
|
| . | . | . | . | . | . | . | . |   |   |
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |
| . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |
Template Sequence |   |
V | E | E | M | K | K | I | A | A | K | E | A | L | K | F | I | E | D | D | . |
. |
. |
. |
. |
. |
. |
. |
M | V | I | G | L | G | T | G | S | T | T | A | Y | F | I | K | L | L | G | E | K | L | K | R | G | E | I | S | D | I | V | G | V | P | T | S | . |
. |
. |
. |
. |
. |
. |
Y | Q | A | K | L | L | A | I | E | H |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | G | G | G |
|
| S | S | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S |
| S |  |  |  |  |  | S | S | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . |
  |
  |   |
492 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
G | V | T | C | V |
Query Conservation |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
Template Sequence |   |
D | I | P | I | A |
Template Known Secondary structure |   |
T |
|
| B |
|
Template Predicted Secondary structure |   |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
68 | . | 70 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|