Job Description P40719 Confidence 100.00% Date Wed Jan 25 15:20:54 GMT 2012 Rank 3 Aligned Residues 267 % Identity 15% Template c2q8fA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1 Resolution 2.03 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	V	L	L	G	R	E	L	A	P	L	N	K	L	A	L	A	L	R	M	R	D	P	D	S	E	K	P	L	N	A	T	G	V	P	S	E	V	R	P	L	V	E	S	L	N	Q	L	F	A	R	T	H	A	M	M	V	R	E	R	R	F	T	S	D	A	A	H	E	L	R	S	P	L	T	A	L	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	M	F	L	R	Q	E	L	P	V	R	L	A	N	I	M	K	E	I	S	L	L	P	D	N	L	L	R	T	P	S	V	Q	L	V	Q	S	W	Y	I	Q	S	L	Q	E	L	L	D	F	K	D	K	S	A	E	D	A	K	A	I	Y	D	F	T	D	T	V	I	R	I	R	N	R	H	N	D	V	I	P	T
Template Known Secondary structure																					T	T	S						T	S																		G	G	G	T	T	S		T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		258	.	260	.	.	.	.						.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		Q	T	E	V	A	Q	L	.	.	.	.	.	S	D	D	D	P	Q	A	R	K	K	A	L	L	Q	L	H	S	G	I	D	R	A	T	R	L	V	D	Q	L	L	T	L	S	R	L	D	S	L	D	N	L	Q	D	V	A	E	I	P	L	E	D	L	L	Q	S	S	V	M	D	I	Y	H	T	A	Q	Q	A	K
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.																																			.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		M	A	Q	G	V	I	E	Y	K	E	S	F	D	P	V	T	S	Q	N	V	Q	Y	F	L	D	R	F	Y	M	S	R	I	S	I	R	M	L	L	N	Q	H	S	L	L	F	G	.	.	.	.	H	I	G	S	I	N	P	N	C	N	V	L	E	V	I	K	D	G	Y	E	N	A	R	R	L	C	D	L	Y	Y
Template Known Secondary structure																																																.	.	.	.		B	T	T	B
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		333	.									.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.								.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																.	.	.	.
Query Sequence		I	D	.	.	.	.	.	.	.	.	V	R	L	T	L	N	A	H	S	I	K	R	T	G	Q	P	L	L	L	S	L	L	V	R	N	L	L	D	N	A	V	R	Y	.	.	.	.	.	.	.	S	P	Q	G	S	V	V	D	V	T	L	N	A	D	N	.	.	.	.	F	I	V	R	D	N	G	P	G	V	T
Query Conservation				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		I	N	S	P	E	L	E	L	E	E	L	N	A	K	S	P	G	Q	P	I	Q	V	V	Y	V	P	S	H	L	Y	H	M	V	F	E	L	F	K	N	A	M	R	A	T	M	E	H	H	A	N	R	G	V	Y	P	P	I	Q	V	H	V	T	L	G	N	E	D	L	T	V	K	M	S	D	R	G	G	G	V	P
Template Known Secondary structure		S												S	S	S	T	T	S																														S	T	T	T	T													S	S										S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.										.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.
Query Sequence		P	E	A	L	A	R	I	G	E	R	F	Y	R	P	P	G	Q	T	A	.	.	.	.	.	.	.	.	.	T	G	S	G	L	G	L	S	I	V	Q	R	I	A	K	L	H	G	M	N	V	E	F	G	N	A	E	Q	G	G	F	E	A	K	V	S
Query Conservation																					.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	K	I	D	R	L	F	N	Y	M	Y	S	T	A	P	R	P	R	V	E	T	S	R	A	V	P	L	A	G	F	G	Y	G	L	P	I	S	R	L	Y	A	Q	Y	F	Q	G	D	L	K	L	Y	S	L	E	G	Y	G	T	D	A	V	I	Y
Template Known Secondary structure						G	G	G	G		T	T	T	T							S	S			S				S	S		T	T													T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions