Job Description P40719 Confidence 99.56% Date Wed Jan 25 15:20:54 GMT 2012 Rank 28 Aligned Residues 110 % Identity 17% Template c2q2eB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei Resolution 4.00 Å

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		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.						.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																			.	.	.											.	.	.	.	.
Query SS confidence																																			.	.	.											.	.	.	.	.
Query Sequence		N	A	H	S	I	K	R	T	G	Q	P	L	L	L	S	L	L	V	R	N	L	L	D	N	A	V	R	Y	S	P	Q	G	S	.	.	.	V	V	D	V	T	L	N	A	D	N	.	.	.	.	.	F	I	V	R	D	N	G	P	G	V	T	P	E	A	L	A	R	I	G	E	R	F	Y	R	P	P	G	Q	T
Query Conservation																																			.	.	.											.	.	.	.	.
Alig confidence																																			.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		N	R	Q	I	L	G	F	D	S	A	P	R	S	L	I	T	T	V	K	E	A	V	D	N	A	L	D	A	C	E	E	A	G	I	L	P	D	I	L	V	Q	V	E	R	T	G	P	D	Y	V	T	V	I	I	E	D	N	G	P	G	I	V	R	E	Q	I	P	K	V	F	A	K	L	L	Y	G	F	H	A	L
Template Known Secondary structure		S	T	T	T	S	S		S	S																					T	T	T	S		S											T	T	T										S					G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		412			.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																					.							.
Query SS confidence			.	.																					.							.
Query Sequence		A	.	.	T	G	S	G	L	G	L	S	I	V	Q	R	I	A	K	L	H	G	M	N	.	V	E	F	G	N	A	.	E	Q	G	G	F	E	A	K	V	S	W
Query Conservation			.	.																					.							.
Alig confidence			.	.																					.							.
Template Conservation
Template Sequence		K	S	R	G	Q	Q	G	I	G	I	S	A	A	V	L	Y	A	Q	M	T	A	G	R	H	T	K	I	L	S	K	T	S	P	T	A	P	A	H	Y	Y	E	L
Template Known Secondary structure					S	S	S	S														T											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions