Job Description P27896 Confidence 99.92% Date Wed Jan 25 15:20:46 GMT 2012 Rank 9 Aligned Residues 320 % Identity 12% Template c3a0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) Resolution 3.80 Å

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		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	T	R	D	L	H	E	A	K	R	R	L	E	V	L	Y	Q	C	S	Q	A	L	N	T	S	Q	I	D	V	H	C	F	R	H	I	L	Q	I	V	R	D	N	E	A	A	E	Y	L	E	L	N	V	G	E	N	W	R	I	S	E	G	Q	P	N	P	E	L	P	M	Q	I	L	P	V	T	M	Q	E	T
Query Conservation
Alig confidence																																																		.	.	.	.
Template Conservation																																																		.	.	.	.
Template Sequence		F	S	E	S	I	L	E	S	L	E	T	A	I	I	T	L	S	K	D	G	R	I	T	E	W	N	K	K	A	E	Q	L	F	G	L	K	K	E	N	V	L	G	R	R	L	K	D	L	.	.	.	.	P	D	F	E	E	I	G	S	V	A	E	S	V	F	E	N	K	E	P	V	F	L	N	F	Y	K	F	G
Template Known Secondary structure					S	S	G	G	G	S	S	S							S	S	S	B		S		B									S			S	T	T	T	T	T		B	S	T	T	S	.	.	.	.	T	T	T	T																							B	T
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.					.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	G	E	L	H	W	Q	N	S	H	V	S	S	S	E	P	L	L	N	S	V	S	S	M	L	G	R	G	L	Y	F	N	Q	A	Q	K	H	F	Q	Q	L	L	L	M	E	E	R	A	T	I	A	R	E	L	H	D	S	L	A	Q	V	L	S	Y	L	R	I	Q	L	T	L	L	K	R	S	I	P	E	D
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		E	R	Y	F	N	I	R	F	S	P	F	R	N	A	K	T	Q	L	L	E	G	V	I	I	T	I	D	D	V	T	E	L	Y	K	Y	E	E	E	R	K	R	R	E	R	L	S	I	L	G	E	M	T	A	R	V	A	H	E	I	R	N	P	I	T	I	I	G	G	F	I	M	R	M	K	K	H	L	.	D	D
Template Known Secondary structure		T	B												T	T	T	T	S	S											S	T	T	T	T	T	T	T	T	T	T																																		T	T	S		.	S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.		.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.							.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		N	A	T	A	Q	S	I	M	A	D	F	S	Q	A	L	N	D	A	Y	R	Q	L	R	E	L	L	T	T	F	R	L	T	.	.	.	.	.	.	L	Q	Q	A	D	L	P	S	A	L	R	E	M	L	D	T	L	Q	N	Q	T	S	A	K	L	T	L	D	C	R	L	P	T	L	A	L	D	A	Q	M	Q	V
Query Conservation																																		.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.																																					.
Template Conservation																																																																												.
Template Sequence		P	E	T	L	K	K	Y	I	N	I	I	T	N	E	L	S	R	L	E	T	I	V	K	E	I	L	E	Y	S	K	E	R	V	L	E	F	T	E	F	N	L	N	E	L	I	R	E	V	Y	V	L	F	E	E	K	I	R	K	M	N	I	D	F	C	F	E	T	D	N	E	D	L	R	V	.	E	A	D	R	T
Template Known Secondary structure		S	S		T	T																																																				T	T	T	T								S		S					.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.		.	.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.							520	.	.	.	.	.	.	.	.	.	530	.	.	.		.	.	.	.	.	.	540
Predicted Secondary structure																			.																																			.	.	.	.	.	.															.
Query SS confidence																			.																																			.	.	.	.	.	.															.
Query Sequence		H	L	L	Q	I	I	R	E	A	V	L	N	A	M	K	H	A	.	N	A	S	E	I	A	V	S	C	V	T	A	P	D	G	N	H	T	V	Y	I	R	D	N	G	I	G	I	G	E	P	K	E	P	.	.	.	.	.	.	E	G	H	Y	G	L	N	I	M	R	E	R	A	E	.	R	L	G	G	T	L	T
Query Conservation																			.																																			.	.	.	.	.	.															.
Alig confidence																			.															.																				.	.	.	.	.	.															.
Template Conservation																																		.
Template Sequence		R	I	K	Q	V	L	I	N	L	V	Q	N	A	I	E	A	T	G	E	N	G	K	I	K	I	T	S	E	D	M	Y	T	.	K	V	R	V	S	V	W	N	S	G	P	P	I	P	E	E	L	K	E	K	I	F	S	P	F	F	T	T	L	G	L	S	I	C	R	K	I	I	E	D	E	H	G	G	K	I	W
Template Known Secondary structure												T					T	T		T	T											T	T	.										S					G	G	G	G	T	T	T	S	S	S								T									T	T		S	B
Template Predicted Secondary structure																																		.
Template SS confidence
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.		.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	Q	P	S	G	G	G	T	L	V	S	I	S	F	R	S	A	E	G	E	E
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		T	E	N	R	.	E	N	G	V	V	F	I	F	E	I	P	K	T	P	E	K	R
Template Known Secondary structure						.	S	S										S		T	T
Template Predicted Secondary structure						.
Template SS confidence
		735	.	.	.		.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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