Job Description P27896 Confidence 99.97% Date Wed Jan 25 15:20:46 GMT 2012 Rank 7 Aligned Residues 224 % Identity 13% Template c1y8oA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex Resolution 2.48 Å

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		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.							390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		R	G	L	Y	F	N	Q	A	Q	K	H	F	Q	Q	L	L	L	M	E	E	R	A	T	I	A	R	E	L	H	D	S	L	A	Q	V	L	S	Y	L	R	I	Q	L	T	L	L	K	R	.	.	.	.	.	.	S	I	P	E	D	N	A	T	A	Q	S	I	M	A	D	F	S	Q	A	L	N	D	A	Y	R	Q
Query Conservation																																																		.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.
Template Conservation
Template Sequence		M	Q	S	F	L	E	L	L	E	Y	E	N	K	S	P	E	D	P	Q	V	L	D	N	F	L	Q	V	L	I	K	V	R	N	R	H	N	D	V	V	P	T	M	A	Q	G	V	I	E	Y	K	E	K	F	G	F	D	P	F	I	S	T	N	I	Q	Y	F	L	D	R	F	Y	T	N	R	I	S	F	R	M	L
Template Known Secondary structure										G	G	G	G			T	T																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.													430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.											.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	E	L	L	T	T	F	R	L	T	L	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	A	D	L	P	S	A	L	R	E	M	L	D	T	L	Q	N	.	.	.	.	.	.	.	.	.	.	Q	T	S	A	K	L	T	L	D	C	R	L	P	T	L	A	L	D	A	Q	M	Q	V	H	L	L	Q	I
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	Q	H	T	L	L	F	G	G	D	T	N	P	V	H	P	K	H	I	G	S	I	D	P	T	C	N	V	A	D	V	V	K	D	A	Y	E	T	A	K	M	L	C	E	Q	Y	Y	L	V	A	P	E	L	E	V	E	E	F	N	A	K	A	P	D	K	P	I	Q	V	V	Y	V	P	S	H	L	F	H	M
Template Known Secondary structure										S			S	S		S	S	T	T	S	B	T	T	B																										S												T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.										.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.										520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query Sequence		I	R	E	A	V	L	N	A	M	K	H	.	.	.	.	.	.	.	.	.	A	N	A	S	E	I	A	V	S	C	V	T	A	P	D	G	N	H	T	V	Y	I	R	D	N	G	I	G	I	G	E	P	K	E	P	.	.	.	.	.	.	.	.	.	E	G	H	Y	G	L	N	I	M	R	E	R	A	E	R	L
Query Conservation													.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.																.																				.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		L	F	E	L	F	K	N	S	M	R	A	T	V	E	L	Y	E	D	R	K	E	G	Y	P	A	V	K	T	L	V	T	L	G	K	E	.	D	L	S	I	K	I	S	D	L	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	P	L	F	G	Y	G	L	P	I	S	R	L	Y	A	R	Y	F
Template Known Secondary structure																		T	T		S	S													S	S	.										S									G	G	G	G		T	T	T					T	T												T
Template Predicted Secondary structure																																					.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	T	L	T	F	S	Q	P	S	G	G	G	T	L	V	S	I	S	F	R	S	A	E	G	E	E	S	Q	L	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	D	L	K	L	Y	S	M	E	G	V	G	T	D	A	V	I	Y	L	K	A	L	S	S	E	S	F	E	R	L
Template Known Secondary structure		T									T	T	T										S		G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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