Job Description P64423 Confidence 6.68% Date Thu Jan 5 12:08:12 GMT 2012 Rank 90 Aligned Residues 117 % Identity 4% Template c1nfoA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.																		.
Query SS confidence																																		.	.	.	.	.	.																		.
Query Sequence		D	A	L	T	D	H	S	S	E	F	I	E	Q	L	H	D	K	I	I	D	L	E	D	N	L	L	D	Q	Q	I	P	P	.	.	.	.	.	.	R	G	F	L	A	L	L	R	K	Q	L	I	V	M	R	R	Y	.	M	A	P	Q	R	D	V	Y	A	R	L	A	S	E	R	L	P	W	M	S	D	D	Q	R
Query Conservation																																		.	.	.	.	.	.																		.
Alig confidence																																		.	.	.	.	.	.																		.
Template Conservation
Template Sequence		E	L	A	L	G	R	F	W	D	Y	L	R	W	V	Q	T	L	S	E	Q	V	Q	E	E	L	L	S	S	Q	V	T	Q	E	L	R	A	L	M	D	E	T	M	K	E	L	K	A	Y	K	S	E	L	E	E	Q	R	L	S	K	E	L	Q	A	A	Q	A	R	L	G	A	D	M	E	D	V	C	G	R	L	V
Template Known Secondary structure																												S	S																									T	T
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	M	Q	D	I	A	D	R	L	G	R	G	L	D	E	I	D	A	C	I	A	R	T	G	V	M	A	D	E	I	A	Q	V	M	Q	E	N	L	A	R	R	T	Y	T	M	S
Query Conservation
Alig confidence											.	.	.
Template Conservation											.	.	.
Template Sequence		Q	Y	R	G	E	V	Q	A	M	.	.	.	L	G	Q	S	T	E	E	L	R	V	R	L	A	S	H	L	R	K	L	R	K	R	L	L	R	D	A	D	A	L	Q	K	C	L	A
Template Known Secondary structure										T	.	.	.	T	T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions