Job Description P13016 Confidence 100.00% Date Thu Jan 5 11:33:25 GMT 2012 Rank 10 Aligned Residues 154 % Identity 17% Template d1ohta_ SCOP info N-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like Resolution 2.0

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	G	A	R	R	V	P	S	P	H	Y	D	C	R	P	D	D	E	T	P	T	L	L	V	V	H	N	I	S	L	P	P	G	E	F	G	G	P	W	I	D	A	L	F	T	G	T	I	D	P	Q	A	H	P	F	F	A	E	I	A	H	L	R	V	S	A	H	C	L	I	R	R	D	G	E	I	V	Q	Y
Query Conservation
Alig confidence																																																	.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		L	S	R	S	D	W	G	A	R	L	P	K	S	V	E	H	F	Q	G	P	A	P	Y	V	I	I	H	H	S	Y	X	P	A	V	C	Y	S	T	P	D	C	X	K	S	X	R	D	.	.	.	.	X	Q	D	F	H	Q	L	E	R	G	W	N	D	I	G	Y	S	F	G	I	G	G	D	G	X	I	Y	T	G
Template Known Secondary structure				T	G	G	G	T					S				B			S	S										S	S	S					S											.	.	.	.								T	S			S	S		S	S	S					T	T	S					S
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																							.																										.
Query SS confidence																																							.																										.
Query Sequence		V	P	F	D	K	R	A	W	H	A	G	V	S	Q	Y	Q	G	R	E	R	C	N	D	F	S	I	G	I	E	L	E	G	T	D	T	L	A	.	Y	T	D	A	Q	Y	Q	Q	L	A	A	V	T	R	A	L	I	D	C	Y	P	D	I	A	K	.	N	M	T	G	H	C	D	I	A	P	D	R	K	T	D	P
Query Conservation																																							.																										.
Alig confidence													.	.	.	.	.	.	.	.																			.																										.											.	.
Template Conservation													.	.	.	.	.	.	.	.																																																								.	.
Template Sequence		R	G	F	N	V	I	G	A	H	A	P	.	.	.	.	.	.	.	.	K	Y	N	D	K	S	V	G	I	V	L	I	G	D	W	R	T	E	L	P	P	K	Q	X	L	D	A	A	K	N	L	I	A	F	G	V	F	K	G	Y	I	D	P	A	Y	K	L	L	G	H	R	Q	V	R	D	.	.	T	E	C	P
Template Known Secondary structure		S		T	T	B			S	S	S	T	.	.	.	.	.	.	.	.	T	T	T	T	S							S	S			S	S	S																				T	T	S										G	G	G	T	S	S	.	.	S		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																																								.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.
		166	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	A	F	D	W	A	R	F	R	V
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		G	G	R	L	.	F	A	E	I	S	S
Template Known Secondary structure						.					T	T
Template Predicted Secondary structure						.
Template SS confidence
		162	.	.	.		.	.	.	.	170	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions