Job Description P13016 Confidence 100.00% Date Thu Jan 5 11:33:25 GMT 2012 Rank 4 Aligned Residues 150 % Identity 23% Template c3hmaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase xlya; PDBTitle: amidase from bacillus subtilis Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		M	L	L	E	Q	G	W	L	V	G	A	R	R	V	P	S	P	H	Y	D	C	R	P	D	.	D	E	T	P	T	L	L	V	V	H	N	I	S	L	P	P	G	E	F	G	G	P	W	I	D	A	L	F	T	G	T	I	D	P	Q	A	H	P	F	F	A	E	I	A	H	L	R	V	S	A	H	C	L	I	R
Query Conservation																										.
Alig confidence											.	.	.	.	.	.	.									.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	I	I	Q	D	F	I	P	.	.	.	.	.	.	.	V	G	A	N	N	R	P	G	Y	A	M	T	P	L	Y	I	T	V	H	N	T	A	N	T	A	V	G	A	D	A	A	A	H	A	R	Y	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	D	T	T	T	S	W	H	F	T	V	D
Template Known Secondary structure											.	.	.	.	.	.	.	T	T		T	T					B																T	T		S									T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T						S
Template Predicted Secondary structure											.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.								.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.														.	.	.	.	.	.	.	.	60	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	G	E	I	V	Q	Y	V	P	F	D	K	R	A	W	H	A	G	V	S	Q	Y	Q	G	R	E	R	C	N	D	F	S	I	G	I	E	L	E	G	T	D	T	L	A	Y	T	D	A	Q	Y	Q	Q	L	A	A	V	T	R	A	L	I	D	C	Y	P	D	I	A	K	N	M	T	G	H	C	D	I	A	P
Query Conservation
Alig confidence		.																						.	.	.	.																.
Template Conservation		.																						.	.	.	.																.
Template Sequence		.	D	T	E	I	Y	Q	H	L	P	L	N	E	N	G	W	H	A	G	D	G	N	.	.	.	.	G	S	G	N	R	A	S	I	G	I	E	I	C	E	N	.	A	D	G	D	F	A	K	A	T	A	N	A	Q	W	L	I	K	T	L	M	A	E	H	N	I	S	L	A	N	V	V	P	H	K	Y	W	S	G
Template Known Secondary structure		.	S	S						S		T	T	B			S		S	S	S	T	T	.	.	.	.	S					S										.	T	T	S																				T	T			G	G	G
Template Predicted Secondary structure		.																						.	.	.	.																.
Template SS confidence
			65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.					.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		D	R	K	T	D	P	G	P	A	F	D	.	W	A	R	F	R	V	L	V
Query Conservation													.
Alig confidence		.	.										.
Template Conservation		.	.
Template Sequence		.	.	K	E	C	P	R	K	L	L	D	T	W	D	S	F	K	A	G	I
Template Known Secondary structure		.	.				S	T	T	T	G	G	G							T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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