Job Description P13016 Confidence 99.96% Date Thu Jan 5 11:33:25 GMT 2012 Rank 19 Aligned Residues 149 % Identity 11% Template c3ep1B_ PDB info PDB header:immune system Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		L	V	G	A	R	R	V	P	S	P	H	Y	D	C	R	P	D	D	E	T	P	T	L	L	V	V	H	N	I	S	L	P	P	G	E	.	.	.	F	G	G	P	W	I	D	A	L	F	T	G	T	I	D	P	Q	A	H	P	F	F	A	E	I	A	H	L	R	V	S	A	H	C	L	I	R	R	D	G	E	I
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.												.	.	.	.	.
Template Conservation																																																			.	.	.	.	.
Template Sequence		V	P	R	Q	Q	W	A	A	I	E	P	R	R	Q	I	K	M	N	G	R	A	D	E	I	F	L	W	Q	T	G	P	D	T	C	S	G	C	L	Q	D	S	S	C	T	E	Q	I	V	K	.	.	.	.	.	A	L	Q	D	A	D	F	K	E	G	N	D	D	I	K	Y	N	F	L	I	D	Q	D	G	V	I
Template Known Secondary structure		B		T	T	T	T	T					S				B		S	S												T	T	T	T			T	T	T	T	T	T	T							.	.	.	.	.									T	T		S	S		S		S					T	T	S
Template Predicted Secondary structure																																																			.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		V	Q	Y	V	P	F	D	K	R	A	W	H	A	G	V	S	Q	Y	Q	G	R	E	R	C	N	D	F	S	I	G	I	E	L	E	G	T	D	T	L	.	A	Y	T	D	A	Q	Y	Q	Q	L	A	A	V	T	R	A	L	I	D	C	Y	P	D	I	A	K	N	M	T	G	H	C	D	I	A	P	D	R	K	T
Query Conservation																																									.
Alig confidence																.	.	.	.	.	.	.	.																		.																										.	.	.	.								.	.
Template Conservation																.	.	.	.	.	.	.	.																																												.	.	.	.								.	.
Template Sequence		Y	E	G	R	G	W	G	V	V	G	Q	H	T	K	.	.	.	.	.	.	.	.	G	R	D	S	H	S	I	G	V	A	V	I	G	D	F	G	K	K	E	P	S	Q	A	L	Q	D	A	L	S	K	L	I	I	C	G	Q	A	A	E	E	L	S	S	.	.	.	.	G	A	R	L	R	T	T	.	.	P	A
Template Known Secondary structure				S	S		T	T	B			S	S	S	T	.	.	.	.	.	.	.	.	T			T	T							S	S			S	S	S																				T	T	S				.	.	.	.								.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																																												.	.	.	.								.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.									.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.			.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	G	P	A	F	D	W	A	R	F	R	V
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		M	S	G	Q	A	F	.	Y	D	M	L	D	R
Template Known Secondary structure								.
Template Predicted Secondary structure								.
Template SS confidence
		230	.	.	.	.	.		.	.	.	.	240	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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